Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2974

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11341 and 11342 are separated by 456 nucleotides11342 and 11343 are separated by 723 nucleotides mRNA_2973: 11341 - K11996 MOCS3, UBA4 adenylyltransferase and sulfurtransferase, at 688,176 to 690,178 11341 mRNA_2974: 11342 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 690,635 to 692,698 11342 mRNA_2975: 11343 - KOG3072 Long chain fatty acid elongase, at 693,422 to 694,637 11343

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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689,656 + 11341 mRNA_2973 0.74 +0.1
689,670 + 11341 mRNA_2973 0.75 +2.6
689,775 - 11341 mRNA_2973 0.80 +0.7
689,782 + 11341 mRNA_2973 0.80 -0.0
689,912 - 11341 mRNA_2973 0.87 +1.2
689,932 + 11341 mRNA_2973 0.88 +0.1
690,059 + +0.3
690,061 + +0.7
690,090 + -0.6
690,247 - +2.8
690,352 - +1.2
690,410 - -0.1
690,525 + +0.1
690,658 + -0.4
690,806 - -1.3
690,806 - +1.1
690,822 + +2.5
690,842 + 11342 mRNA_2974 0.10 -0.4
690,975 + 11342 mRNA_2974 0.16 +0.9
690,978 - 11342 mRNA_2974 0.17 +0.4
690,996 + 11342 mRNA_2974 0.17 -0.2
691,269 + 11342 mRNA_2974 0.31 +0.2
691,374 - 11342 mRNA_2974 0.36 +3.7
691,520 + 11342 mRNA_2974 0.43 +1.0
691,651 + 11342 mRNA_2974 0.49 +0.3
691,691 - 11342 mRNA_2974 0.51 +1.3
691,730 - 11342 mRNA_2974 0.53 +1.6
691,947 - 11342 mRNA_2974 0.64 +0.2
692,010 - 11342 mRNA_2974 0.67 -0.1
692,072 - 11342 mRNA_2974 0.70 -0.2
692,139 + 11342 mRNA_2974 0.73 -2.3
692,552 + +1.7
692,830 + +1.1
692,836 + +0.6
692,841 + +2.6
692,850 + +2.7
692,866 - +2.7
692,867 - +1.7
692,919 + +0.1
692,928 + -0.0
692,929 + +1.7
692,929 - +0.6
692,932 + -1.1
692,935 - +0.7
692,937 - +0.4
692,938 + +0.5
692,941 + +2.0
692,942 + +0.4
692,944 + -0.5
692,944 + +1.0
692,948 - +0.1
692,948 + +2.3
692,951 + +0.6
692,952 + -0.0
692,954 + -1.1
692,957 + +0.8
692,964 - +1.5
692,969 - +0.2
692,983 + +1.2
692,999 - +0.3
693,000 + -0.5
693,002 - -0.0
693,006 + +0.3
693,007 + +0.6
693,173 + +1.8
693,191 - +0.4
693,294 - +0.7
693,454 - +0.9
693,479 + +1.6
693,482 + +0.6
693,631 + 11343 mRNA_2975 0.17 -0.5
693,640 + 11343 mRNA_2975 0.18 +0.6
693,647 - 11343 mRNA_2975 0.19 +0.1
693,654 - 11343 mRNA_2975 0.19 +0.4
693,655 + 11343 mRNA_2975 0.19 +0.1
693,682 + 11343 mRNA_2975 0.21 +0.6

Or see this region's nucleotide sequence