Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2979

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11346 and 11347 overlap by 4 nucleotides mRNA_2978: 11346 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 699,095 to 700,907 11346 mRNA_2979: 11347 - Hypothetical Protein, at 700,904 to 702,212 11347

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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700,062 + 11346 mRNA_2978 0.53 +1.5
700,083 + 11346 mRNA_2978 0.54 +0.6
700,299 + 11346 mRNA_2978 0.66 -0.7
700,398 + 11346 mRNA_2978 0.72 -0.9
700,469 - 11346 mRNA_2978 0.76 +1.1
700,470 - 11346 mRNA_2978 0.76 +0.9
700,470 - 11346 mRNA_2978 0.76 -0.7
700,478 - 11346 mRNA_2978 0.76 -0.7
700,581 - 11346 mRNA_2978 0.82 +0.2
700,607 - 11346 mRNA_2978 0.83 +1.5
700,611 + 11346 mRNA_2978 0.84 +1.0
700,611 + 11346 mRNA_2978 0.84 +0.3
700,619 - 11346 mRNA_2978 0.84 +0.2
700,800 - +2.1
700,827 + +1.8
700,907 + +2.5
700,908 + -0.7
700,922 + -0.0
700,924 - +1.5
701,072 - 11347 mRNA_2979 0.13 -0.8
701,222 + 11347 mRNA_2979 0.24 +1.9
701,276 - 11347 mRNA_2979 0.28 +1.3
701,406 + 11347 mRNA_2979 0.38 -0.0
701,457 - 11347 mRNA_2979 0.42 +0.1
701,468 - 11347 mRNA_2979 0.43 +0.3
701,468 - 11347 mRNA_2979 0.43 -1.2
701,471 - 11347 mRNA_2979 0.43 +0.4
701,503 - 11347 mRNA_2979 0.46 -0.9
701,511 - 11347 mRNA_2979 0.46 +3.2
701,517 + 11347 mRNA_2979 0.47 -0.0
701,517 - 11347 mRNA_2979 0.47 +0.8
701,597 - 11347 mRNA_2979 0.53 -0.3
701,602 - 11347 mRNA_2979 0.53 +1.1
701,617 + 11347 mRNA_2979 0.54 +2.4
701,656 - 11347 mRNA_2979 0.57 +0.7
701,665 - 11347 mRNA_2979 0.58 +2.3
701,668 - 11347 mRNA_2979 0.58 -2.4
701,697 - 11347 mRNA_2979 0.61 +2.6
701,738 - 11347 mRNA_2979 0.64 +0.8
701,765 - 11347 mRNA_2979 0.66 +0.9
701,822 - 11347 mRNA_2979 0.70 -0.5
701,823 - 11347 mRNA_2979 0.70 -0.7
701,871 - 11347 mRNA_2979 0.74 -0.1
701,892 + 11347 mRNA_2979 0.75 +0.6
701,906 - 11347 mRNA_2979 0.77 -1.4
701,944 + 11347 mRNA_2979 0.79 -0.7
701,960 - 11347 mRNA_2979 0.81 -0.4
702,028 - 11347 mRNA_2979 0.86 -0.4
702,037 - 11347 mRNA_2979 0.87 -0.3
702,059 + 11347 mRNA_2979 0.88 +0.3
702,062 + 11347 mRNA_2979 0.88 +2.7
702,065 - 11347 mRNA_2979 0.89 +0.9
702,070 - 11347 mRNA_2979 0.89 +2.8
702,090 + +2.1
702,147 - -2.2
702,194 + -1.0
702,218 + +2.9
702,220 - +2.0
702,256 - -0.1
702,256 - +0.9
702,258 - +0.5
702,263 - -0.6
702,263 - -1.1
702,263 - +0.1
702,273 + +0.6
702,276 - +1.0
702,276 - +0.9
702,276 - +2.8
702,276 - +1.2
702,276 - -0.1
702,286 - +0.0
702,290 - -0.1
702,308 - -0.4

Or see this region's nucleotide sequence