Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3058

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11425 and 11426 are separated by 300 nucleotides mRNA_3057: 11425 - K02216 CHK1 serine/threonine-protein kinase Chk1, at 212,271 to 214,660 11425 mRNA_3058: 11426 - Hypothetical Protein, at 214,961 to 216,563 11426

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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213,989 - 11425 mRNA_3057 0.72 +1.4
213,994 + 11425 mRNA_3057 0.72 +1.1
214,072 + 11425 mRNA_3057 0.75 +0.9
214,224 - 11425 mRNA_3057 0.82 -0.8
214,238 - 11425 mRNA_3057 0.82 +0.6
214,243 + 11425 mRNA_3057 0.83 +0.9
214,523 + +0.2
214,665 + +3.3
214,696 + +1.0
214,932 + -0.6
214,987 + -0.5
214,988 + -1.3
215,019 + +0.4
215,262 - 11426 mRNA_3058 0.19 -0.3
215,363 - 11426 mRNA_3058 0.25 +0.9
215,509 + 11426 mRNA_3058 0.34 +0.5
215,589 - 11426 mRNA_3058 0.39 +3.0
215,589 - 11426 mRNA_3058 0.39 +2.3
215,589 - 11426 mRNA_3058 0.39 +1.7
215,589 - 11426 mRNA_3058 0.39 -0.5
215,595 + 11426 mRNA_3058 0.40 +1.9
215,643 + 11426 mRNA_3058 0.43 -0.0
215,766 + 11426 mRNA_3058 0.50 +1.9
215,766 - 11426 mRNA_3058 0.50 +0.7
215,839 - 11426 mRNA_3058 0.55 -1.7
215,842 - 11426 mRNA_3058 0.55 +1.7
215,866 + 11426 mRNA_3058 0.56 +0.3
215,905 - 11426 mRNA_3058 0.59 +1.3
216,117 + 11426 mRNA_3058 0.72 +1.3
216,133 - 11426 mRNA_3058 0.73 -2.2
216,179 - 11426 mRNA_3058 0.76 +2.5
216,189 - 11426 mRNA_3058 0.77 +0.5
216,191 - 11426 mRNA_3058 0.77 -0.6
216,234 - 11426 mRNA_3058 0.79 +0.6
216,271 - 11426 mRNA_3058 0.82 +0.6
216,345 - 11426 mRNA_3058 0.86 +2.1
216,395 - 11426 mRNA_3058 0.89 +0.9
216,443 + +0.6
216,446 - +0.2
216,449 + +1.6
216,569 + +1.9
216,570 + +0.4
216,674 + +0.3
216,742 + -0.1
216,837 - -2.0
216,865 - -0.1
216,868 - -0.2
216,879 + +0.1
216,882 + -0.4
216,884 - -0.6
217,004 + -0.9
217,009 - +0.5
217,011 - +0.3
217,029 - +1.4
217,032 + +0.7
217,035 - +0.9
217,037 + +0.5
217,038 + +0.5
217,045 - -0.7
217,152 - +1.0
217,173 + -2.0
217,193 + -0.3
217,252 - +0.3
217,317 + -0.8
217,461 - -0.0
217,464 + +1.2
217,470 - +1.5
217,470 - +0.1
217,475 + -0.4

Or see this region's nucleotide sequence