Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3059

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11427 and 11428 are separated by 499 nucleotides mRNA_3059: 11427 - Hypothetical Protein, at 217,589 to 219,191 11427 mRNA_3060: 11428 - K13115 CCDC130 coiled-coil domain-containing protein 130, at 219,691 to 221,317 11428

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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216,674 + +0.3
216,742 + -0.1
216,837 - -2.0
216,865 - -0.1
216,868 - -0.2
216,879 + +0.1
216,882 + -0.4
216,884 - -0.6
217,004 + -0.9
217,009 - +0.5
217,011 - +0.3
217,029 - +1.4
217,032 + +0.7
217,035 - +0.9
217,037 + +0.5
217,038 + +0.5
217,045 - -0.7
217,152 - +1.0
217,173 + -2.0
217,193 + -0.3
217,252 - +0.3
217,317 + -0.8
217,461 - -0.0
217,464 + +1.2
217,470 - +1.5
217,470 - +0.1
217,475 + -0.4
217,636 + +1.8
217,909 + 11427 mRNA_3059 0.20 -0.8
217,927 - 11427 mRNA_3059 0.21 +0.4
218,062 + 11427 mRNA_3059 0.30 -0.5
218,066 + 11427 mRNA_3059 0.30 -0.9
218,147 - 11427 mRNA_3059 0.35 +3.4
218,168 + 11427 mRNA_3059 0.36 +1.3
218,203 - 11427 mRNA_3059 0.38 -2.1
218,447 - 11427 mRNA_3059 0.54 +0.0
218,618 + 11427 mRNA_3059 0.64 -1.6
218,635 - 11427 mRNA_3059 0.65 +1.4
218,649 + 11427 mRNA_3059 0.66 +1.3
218,747 + 11427 mRNA_3059 0.72 -2.3
218,798 - 11427 mRNA_3059 0.75 +0.1
218,892 - 11427 mRNA_3059 0.81 +0.6
218,996 + 11427 mRNA_3059 0.88 +0.8
219,037 + -0.3
219,182 - -0.3
219,183 - +0.5
219,309 - +0.1
219,330 - +1.3
219,331 - -0.0
219,346 - -2.0
219,346 - +1.2
219,347 + +1.0
219,451 - -0.9
219,453 + -0.9
219,467 - +2.4
219,484 - +0.4
219,501 - +0.8
219,513 + +0.2
219,624 - +3.0
219,630 + +0.4
219,630 + +1.2
219,637 + -1.4
219,639 + -1.1
219,753 - -0.2
219,759 - -0.8
219,763 + -0.0
219,765 - -1.3
219,768 - -0.0
219,773 + +0.5
219,780 - -1.7
219,902 - 11428 mRNA_3060 0.13 +1.0
219,902 - 11428 mRNA_3060 0.13 -1.0
219,903 + 11428 mRNA_3060 0.13 +1.0
219,908 + 11428 mRNA_3060 0.13 +0.9
219,931 + 11428 mRNA_3060 0.15 +0.0
220,038 - 11428 mRNA_3060 0.21 -0.3
220,082 + 11428 mRNA_3060 0.24 +1.1

Or see this region's nucleotide sequence