Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3064

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11431 and 11432 are separated by 82 nucleotides11432 and 11433 are separated by 52 nucleotides mRNA_3063: 11431 - Hypothetical Protein, at 227,293 to 229,777 11431 mRNA_3064: 11432 - K17617 CTDNEP1, DULLARD, NEM1 CTD nuclear envelope phosphatase 1, at 229,860 to 230,752 11432 mRNA_3065: 11433 - Hypothetical Protein, at 230,805 to 232,101 11433

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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228,961 + 11431 mRNA_3063 0.67 +0.1
228,978 - 11431 mRNA_3063 0.68 +1.6
229,109 - 11431 mRNA_3063 0.73 -0.3
229,135 + 11431 mRNA_3063 0.74 +0.0
229,428 + 11431 mRNA_3063 0.86 +0.5
229,618 + -2.9
229,737 + +0.0
229,737 + +0.2
229,829 - +2.4
229,909 - +0.9
229,958 + 11432 mRNA_3064 0.11 +0.3
229,985 - 11432 mRNA_3064 0.14 -0.4
229,999 - 11432 mRNA_3064 0.16 -1.3
230,450 + 11432 mRNA_3064 0.66 +0.0
230,730 - +3.0
230,789 - +1.9
230,883 + -0.1
230,892 + +0.6
231,040 - 11433 mRNA_3065 0.18 +0.3
231,169 - 11433 mRNA_3065 0.28 +0.2
231,324 + 11433 mRNA_3065 0.40 -0.7
231,459 - 11433 mRNA_3065 0.50 +0.8
231,461 - 11433 mRNA_3065 0.51 +2.1
231,465 - 11433 mRNA_3065 0.51 +0.4
231,467 + 11433 mRNA_3065 0.51 +1.1
231,468 + 11433 mRNA_3065 0.51 +0.1
231,489 + 11433 mRNA_3065 0.53 +0.7
231,592 + 11433 mRNA_3065 0.61 -0.8
231,632 + 11433 mRNA_3065 0.64 +2.7
231,752 + 11433 mRNA_3065 0.73 +0.0

Or see this region's nucleotide sequence