Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3071

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11439 and 11440 are separated by 976 nucleotides mRNA_3071: 11439 - Hypothetical Protein, at 245,578 to 247,225 11439 mRNA_3072: 11440 - KOG1203 Predicted dehydrogenase, at 248,202 to 249,247 11440

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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244,721 - -0.3
244,732 - -0.2
244,839 - +0.3
244,865 + +1.8
244,987 + +0.1
245,018 + +0.5
245,171 - +0.8
245,277 - -2.0
245,292 + +0.6
245,331 - +4.8
245,460 + +0.0
245,873 + 11439 mRNA_3071 0.18 -0.1
246,163 + 11439 mRNA_3071 0.35 -0.5
246,296 - 11439 mRNA_3071 0.44 +2.4
246,359 - 11439 mRNA_3071 0.47 +2.4
246,440 - 11439 mRNA_3071 0.52 +2.3
246,462 - 11439 mRNA_3071 0.54 +0.3
246,473 + 11439 mRNA_3071 0.54 -0.6
246,568 + 11439 mRNA_3071 0.60 -0.0
246,578 - 11439 mRNA_3071 0.61 +0.9
246,579 - 11439 mRNA_3071 0.61 +0.0
246,584 + 11439 mRNA_3071 0.61 +0.5
246,584 + 11439 mRNA_3071 0.61 -0.0
246,584 + 11439 mRNA_3071 0.61 +2.6
246,584 + 11439 mRNA_3071 0.61 -1.0
246,584 + 11439 mRNA_3071 0.61 +2.8
246,584 + 11439 mRNA_3071 0.61 -0.2
246,584 + 11439 mRNA_3071 0.61 +0.6
246,620 + 11439 mRNA_3071 0.63 -0.4
246,657 + 11439 mRNA_3071 0.65 -0.8
246,696 - 11439 mRNA_3071 0.68 +2.0
246,753 - 11439 mRNA_3071 0.71 -0.2
246,753 + 11439 mRNA_3071 0.71 +0.7
246,828 + 11439 mRNA_3071 0.76 +1.1
246,865 + 11439 mRNA_3071 0.78 +0.9
246,934 - 11439 mRNA_3071 0.82 -0.1
247,161 + +0.8
247,284 + -1.3
247,294 - -0.6
247,297 + -4.3
247,311 - +0.5
247,313 - +0.4
247,314 + +1.5
247,444 - +3.0
247,467 - +0.0
247,589 - -0.3
247,597 - +0.3
247,599 + +0.5
247,603 - -1.6
247,605 + -0.5
247,615 + +0.1
247,617 - -0.4
247,618 - -1.2
247,620 + -1.9
247,623 + +0.5
247,625 - -0.4
247,745 + +0.8
247,757 + +0.6
247,765 - +0.6
247,771 + -1.0
247,868 + -0.1
247,908 - +2.3
247,917 - +0.6
247,922 + +0.2
248,052 - -0.8
248,054 - -0.1
248,064 + +0.1
248,077 - +0.6

Or see this region's nucleotide sequence