Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3081

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11448 and 11449 are separated by 691 nucleotides11449 and 11450 are separated by 386 nucleotides mRNA_3080: 11448 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 272,562 to 274,087 11448 mRNA_3081: 11449 - KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins, at 274,779 to 278,054 11449 mRNA_3082: 11450 - K09510 DNAJB4 DnaJ homolog subfamily B member 4, at 278,441 to 278,932 11450

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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273,830 + 11448 mRNA_3080 0.83 +0.3
273,833 + 11448 mRNA_3080 0.83 -0.1
273,934 + 11448 mRNA_3080 0.90 +1.0
274,113 + -1.3
274,113 + -0.5
274,122 + -0.0
274,246 + +0.5
274,257 + +1.2
274,259 + +1.7
274,259 - +0.1
274,267 + -0.2
274,272 + +0.2
274,273 + -1.5
274,284 + +1.7
274,285 - +0.1
274,285 - -1.5
274,286 - +1.4
274,295 + +0.6
274,295 + +0.4
274,296 - +2.1
274,301 + +0.0
274,332 + +0.3
274,356 - +1.0
274,357 + +1.3
274,357 + +2.8
274,393 - +0.6
274,393 - -0.2
274,413 + -0.2
274,417 + -0.5
274,421 - -0.0
274,433 - -0.8
274,437 + +1.0
274,452 + -0.8
274,452 - +1.4
274,536 + -0.0
274,542 - +0.2
274,545 + +0.6
274,568 - -0.2
274,587 + +0.1
274,695 + -0.2
274,697 + +1.0
274,807 + -0.6
274,815 - +1.2
274,827 - +0.9
274,836 - -1.9
274,867 - +1.1
274,952 - -0.6
274,983 - +0.6
275,000 + -1.4
275,119 + 11449 mRNA_3081 0.10 -0.4
275,119 + 11449 mRNA_3081 0.10 +0.4
275,172 + 11449 mRNA_3081 0.12 +1.5
275,263 + 11449 mRNA_3081 0.15 -1.1
275,329 + 11449 mRNA_3081 0.17 -0.4
275,479 + 11449 mRNA_3081 0.21 +1.2
275,557 - 11449 mRNA_3081 0.24 +1.3
275,587 + 11449 mRNA_3081 0.25 +0.3
275,610 + 11449 mRNA_3081 0.25 -0.9
275,734 - 11449 mRNA_3081 0.29 +1.0
275,884 + 11449 mRNA_3081 0.34 +1.5
275,887 + 11449 mRNA_3081 0.34 -0.7
276,035 + 11449 mRNA_3081 0.38 -0.2
276,143 - 11449 mRNA_3081 0.42 -0.4
276,173 + 11449 mRNA_3081 0.43 +0.2
276,207 + 11449 mRNA_3081 0.44 +0.7
276,213 - 11449 mRNA_3081 0.44 +0.7
276,311 - 11449 mRNA_3081 0.47 +1.1
276,492 + 11449 mRNA_3081 0.52 +0.3
276,495 - 11449 mRNA_3081 0.52 +0.4
276,592 + 11449 mRNA_3081 0.55 +0.9
276,619 - 11449 mRNA_3081 0.56 +0.1
276,621 - 11449 mRNA_3081 0.56 +0.8
276,622 - 11449 mRNA_3081 0.56 -0.2
276,651 + 11449 mRNA_3081 0.57 +0.4
276,751 - 11449 mRNA_3081 0.60 +1.3
276,764 - 11449 mRNA_3081 0.61 +0.9
276,771 - 11449 mRNA_3081 0.61 +0.7
276,777 + 11449 mRNA_3081 0.61 +0.0
276,790 + 11449 mRNA_3081 0.61 +1.1
276,815 + 11449 mRNA_3081 0.62 +0.7
277,210 + 11449 mRNA_3081 0.74 +0.2
277,221 - 11449 mRNA_3081 0.75 +0.2
277,232 - 11449 mRNA_3081 0.75 -1.5
277,241 - 11449 mRNA_3081 0.75 +0.3
277,595 + 11449 mRNA_3081 0.86 +0.7
277,644 + 11449 mRNA_3081 0.87 +2.6
277,673 + 11449 mRNA_3081 0.88 +0.5
277,681 - 11449 mRNA_3081 0.89 +0.1
277,797 + -0.2
277,797 - +0.5
277,824 + +1.5
277,835 - +0.0
277,836 + +1.3
277,842 + +1.7
277,933 - +0.6
277,960 - +2.0
277,981 + -1.5
277,985 + +0.5
278,083 - +0.6
278,105 - +0.7
278,108 + -0.1
278,135 - -1.1
278,138 + -0.9
278,246 - +2.1
278,263 - -0.1
278,264 - +1.7
278,293 + +0.9
278,402 + +2.5
278,557 - 11450 mRNA_3082 0.24 +0.4
278,558 - 11450 mRNA_3082 0.24 -0.6
278,565 + 11450 mRNA_3082 0.25 -1.4
278,568 - 11450 mRNA_3082 0.26 +1.0
278,704 + 11450 mRNA_3082 0.53 +0.3
278,871 + 11450 mRNA_3082 0.87 +0.1
278,986 - +0.9
278,990 - +1.4

Or see this region's nucleotide sequence