Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3085

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11453 and 11454 are separated by 731 nucleotides mRNA_3085: 11453 - K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit, at 284,368 to 286,217 11453 mRNA_3086: 11454 - K03136 TFIIE1, GTF2E1, TFA1, tfe transcription initiation factor TFIIE subunit alpha, at 286,949 to 288,955 11454

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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283,419 - -0.1
283,531 + +1.1
283,534 + +0.7
283,545 + -1.0
283,545 + +1.4
283,547 - +0.6
283,563 + +0.5
283,580 + +2.0
283,710 + -1.1
283,826 - +0.2
283,827 + +0.9
283,844 + -2.1
283,854 + -1.7
283,858 + +0.8
283,858 + +0.4
283,860 - +0.7
283,861 + +0.6
283,863 - +0.8
283,864 + +2.7
283,865 + +2.4
283,869 - +0.1
283,995 + +2.6
283,996 - +1.1
284,003 + +2.1
284,012 + +0.6
284,017 + -0.3
284,047 + +0.8
284,134 + +0.1
284,141 - +1.2
284,143 - +0.3
284,148 + -0.3
284,167 + +0.5
284,170 - -1.4
284,171 + +0.2
284,222 + -0.1
284,282 + -1.7
284,302 - +0.9
284,309 + -0.2
284,321 + +0.8
284,324 + -0.2
284,326 + -2.4
284,331 - +0.1
284,331 - +0.3
284,331 - +1.7
284,331 + +1.8
284,332 - +0.8
284,340 + -3.0
284,444 + +0.9
284,451 - +0.2
284,452 + +0.6
284,454 - -0.4
284,465 - -1.7
284,474 + +1.3
284,477 - +0.8
284,481 - -2.0
284,605 + 11453 mRNA_3085 0.13 +0.9
284,752 + 11453 mRNA_3085 0.21 +0.5
284,905 - 11453 mRNA_3085 0.29 +0.6
284,917 - 11453 mRNA_3085 0.30 +2.0
285,035 - 11453 mRNA_3085 0.36 +1.5
285,040 - 11453 mRNA_3085 0.36 +0.5
285,172 + 11453 mRNA_3085 0.43 +0.4
285,452 - 11453 mRNA_3085 0.59 +1.1
285,558 - 11453 mRNA_3085 0.64 -1.2
285,595 - 11453 mRNA_3085 0.66 +1.4
285,666 + 11453 mRNA_3085 0.70 +2.1
285,739 + 11453 mRNA_3085 0.74 +0.4
285,744 - 11453 mRNA_3085 0.74 +0.1
286,039 + +1.0
286,151 + +0.5
286,335 + -0.8
286,455 - +0.2
286,462 - +0.9
286,608 - +0.0
286,614 + -0.0
286,614 - +0.2
286,616 - +0.7
286,754 - +1.2
287,058 - +1.0

Or see this region's nucleotide sequence