Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3087

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11454 and 11455 are separated by 596 nucleotides11455 and 11456 are separated by 192 nucleotides mRNA_3086: 11454 - K03136 TFIIE1, GTF2E1, TFA1, tfe transcription initiation factor TFIIE subunit alpha, at 286,949 to 288,955 11454 mRNA_3087: 11455 - HMMPfam-haloacid dehalogenase-like hydrolase-PF12710,SUPERFAMILY--SSF56784,TIGRFAM-HAD-SF-IB HAD phosphoserine phosphatase-like hydrolase, family IB-TIGR01488,TIGRFAM-DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase-TIGR01489, at 289,552 to 290,619 11455 mRNA_3088: 11456 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 290,812 to 293,862 11456

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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288,602 - 11454 mRNA_3086 0.82 -0.8
288,603 + 11454 mRNA_3086 0.82 +0.5
288,681 + 11454 mRNA_3086 0.86 +0.1
288,693 + 11454 mRNA_3086 0.87 +2.8
288,948 - +0.3
288,957 + +2.7
289,069 - +1.1
289,081 + -0.2
289,094 - +1.3
289,097 - +0.6
289,098 - +1.0
289,107 - -0.0
289,110 - +0.9
289,115 - -0.4
289,119 + +0.5
289,243 - +0.7
289,247 + +0.0
289,249 + -1.3
289,280 + +2.3
289,403 + +0.3
289,405 + +0.3
289,410 + -1.9
289,566 + +0.4
289,698 + 11455 mRNA_3087 0.14 +0.7
289,983 + 11455 mRNA_3087 0.40 -1.0
290,096 + 11455 mRNA_3087 0.51 -0.1
290,119 + 11455 mRNA_3087 0.53 +2.0
290,295 - 11455 mRNA_3087 0.70 -0.1
290,411 - 11455 mRNA_3087 0.80 +0.5
290,435 + 11455 mRNA_3087 0.83 +0.3
290,443 + 11455 mRNA_3087 0.83 +0.6
290,452 + 11455 mRNA_3087 0.84 -0.6
290,542 - -1.5
290,551 + -0.8
290,561 - +2.6
290,565 + +0.5
290,570 - +1.1
290,573 + -0.0
290,576 + +1.7
290,581 + +0.3
290,620 - +0.1
290,622 + +1.1
290,647 - +1.1
290,657 - +0.5
290,659 + +0.8
290,660 + +1.8
290,663 - +1.0
290,665 - +1.2
290,667 + -0.4
290,667 - +1.4
290,676 + +1.3
290,685 + -0.4
290,686 - -0.2
290,686 - -0.2
290,687 - +0.0
290,689 + +0.1
290,689 + +2.3
290,689 + -2.5
290,690 - -0.5
290,693 - +0.5
290,694 + -1.0
290,699 - -0.4
290,706 + -0.1
290,706 + -0.1
290,707 - +0.8
290,711 - -0.1
290,717 + +0.3
290,735 - +1.9
290,742 + -1.3
290,742 + -0.3
290,745 + +1.9
290,839 + +0.1
290,858 + +0.9
290,858 - -0.2
290,866 - -0.8
290,905 - +1.1
290,905 - +0.2
290,910 - +0.1
290,915 + -0.0
291,012 - -0.6
291,027 + +0.2
291,110 + +0.5
291,160 + 11456 mRNA_3088 0.11 -0.7
291,310 - 11456 mRNA_3088 0.16 +1.2
291,457 + 11456 mRNA_3088 0.21 -0.4
291,467 + 11456 mRNA_3088 0.21 -0.1

Or see this region's nucleotide sequence