Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3101

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11469 and 11470 are separated by 222 nucleotides mRNA_3101: 11469 - K01490 AMPD AMP deaminase, at 321,739 to 325,524 11469 mRNA_3102: 11470 - BLAST mannoprotein [Rhizoctonia solani AG-1 IA], at 325,747 to 328,243 11470

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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320,883 - -0.1
320,888 + -0.6
321,003 + +1.4
321,170 + +0.5
321,199 + +0.1
321,208 + +0.2
321,210 + -0.0
321,210 + +0.3
321,220 + +1.0
321,262 - +2.2
321,265 - -0.2
321,270 - -0.2
321,270 - -0.3
321,274 + +1.6
321,275 + -0.3
321,279 + -0.2
321,338 + -1.0
321,484 + +0.7
321,492 + -0.6
321,762 - -0.3
321,792 + -0.3
321,921 - -0.3
321,923 + +0.7
321,932 + +2.8
322,391 - 11469 mRNA_3101 0.17 +3.0
322,396 - 11469 mRNA_3101 0.17 +0.2
322,516 - 11469 mRNA_3101 0.21 -1.5
322,517 + 11469 mRNA_3101 0.21 +2.3
322,656 + 11469 mRNA_3101 0.24 -1.0
322,847 + 11469 mRNA_3101 0.29 +0.6
322,865 - 11469 mRNA_3101 0.30 +2.0
323,103 + 11469 mRNA_3101 0.36 +1.1
323,365 + 11469 mRNA_3101 0.43 +0.4
323,668 - 11469 mRNA_3101 0.51 +0.5
323,936 + 11469 mRNA_3101 0.58 +0.1
324,112 - 11469 mRNA_3101 0.63 -1.5
324,135 + 11469 mRNA_3101 0.63 +0.5
324,393 + 11469 mRNA_3101 0.70 -0.9
324,516 - 11469 mRNA_3101 0.73 +3.2
324,550 - 11469 mRNA_3101 0.74 -1.1
324,799 - 11469 mRNA_3101 0.81 -0.0
324,964 - 11469 mRNA_3101 0.85 +0.5
324,971 + 11469 mRNA_3101 0.85 -0.3
325,072 + 11469 mRNA_3101 0.88 -0.7
325,117 + 11469 mRNA_3101 0.89 -0.0
325,139 + 11469 mRNA_3101 0.90 +0.5
325,143 + 11469 mRNA_3101 0.90 -0.2
325,252 - -0.1
325,291 + +1.2
325,413 - -0.0
325,413 - -1.0
325,421 - +0.3
325,435 + +0.9
325,445 - +1.5
325,534 - +0.3
325,557 + -0.4
325,558 - -0.4
325,559 - -0.6
325,561 - -0.4
325,562 - +1.1
325,568 - -3.5
325,568 - -0.2
325,572 + +2.1
325,575 - +0.4
325,577 - -1.0
325,579 - +0.2
325,581 - +1.8
325,595 - +0.6
325,595 - +0.9
325,595 - -2.0
325,596 + +2.8
325,601 + +1.6
325,603 - +1.1
325,722 + +4.2
325,735 - -0.2
325,750 - -0.0
325,762 - +0.8
325,763 - -0.3
325,763 - -0.4
325,763 - +0.5
325,763 - +0.7
325,763 - -0.4
325,763 - -0.1
325,764 - +0.0
325,768 + +1.6
325,768 - +0.2
325,769 - -0.5
325,770 + +1.8
325,771 + +1.1
325,772 + +2.4
325,772 - +2.5
325,775 + +0.8
325,777 + +1.6
325,786 - +1.7
325,795 + +0.8
325,804 - +1.7
325,823 + +3.9
325,871 + +0.9
325,874 - +2.2
325,891 + -0.2
325,894 - +1.8
325,902 + +0.0
325,903 - +1.2
325,904 + -0.0
325,906 - +2.9
325,909 + +1.2
325,918 - -1.2
325,918 - -1.9
325,921 - +1.6
325,922 + +0.1
325,922 + +0.0
325,923 - +0.5
325,924 + +1.4
325,928 + +0.6
325,929 + +2.0
325,930 - +0.2
325,932 - -1.8
325,935 - +0.4
325,936 + -0.4
325,944 + -1.0
325,946 - +0.0
325,950 + -0.3
325,952 + +0.7
325,953 - +1.8
325,957 - +0.5
326,077 - 11470 mRNA_3102 0.13 -1.0
326,078 - 11470 mRNA_3102 0.13 +1.5
326,084 + 11470 mRNA_3102 0.13 +1.8
326,089 - 11470 mRNA_3102 0.14 +1.4
326,090 - 11470 mRNA_3102 0.14 -1.0
326,091 - 11470 mRNA_3102 0.14 +1.0
326,095 - 11470 mRNA_3102 0.14 +2.0
326,096 - 11470 mRNA_3102 0.14 +0.8
326,101 + 11470 mRNA_3102 0.14 -0.4
326,101 + 11470 mRNA_3102 0.14 +0.2
326,117 + 11470 mRNA_3102 0.15 +1.3
326,122 + 11470 mRNA_3102 0.15 +0.2
326,221 + 11470 mRNA_3102 0.19 -0.1
326,223 - 11470 mRNA_3102 0.19 +0.6
326,226 - 11470 mRNA_3102 0.19 -0.1
326,235 - 11470 mRNA_3102 0.20 +0.9
326,249 + 11470 mRNA_3102 0.20 -1.6
326,251 - 11470 mRNA_3102 0.20 +0.2
326,263 + 11470 mRNA_3102 0.21 +1.7
326,270 + 11470 mRNA_3102 0.21 -0.1
326,294 + 11470 mRNA_3102 0.22 +0.3
326,306 + 11470 mRNA_3102 0.22 -0.6
326,405 + 11470 mRNA_3102 0.26 -1.0
326,417 - 11470 mRNA_3102 0.27 +0.7
326,498 + 11470 mRNA_3102 0.30 +1.7
326,513 + 11470 mRNA_3102 0.31 -0.6

Or see this region's nucleotide sequence