Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3120

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11487 and 11488 are separated by 332 nucleotides11488 and 11489 are separated by 9 nucleotides11489 and 11490 are separated by 520 nucleotides mRNA_3119: 11487 - BLAST Spindle pole body protein pcp1 [Hypsizygus marmoreus], at 362,785 to 367,104 11487 mRNA_3120: 11488 - BLAST Protein cps3 [Rhizoctonia solani], at 367,437 to 369,368 11488 mRNA_3121: 11489 - KOG1039 Predicted E3 ubiquitin ligase, at 369,378 to 369,678 11489 mRNA_3122: 11490 - K05290 PIGK phosphatidylinositol glycan, class K, at 370,199 to 371,731 11490

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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366,560 + 11487 mRNA_3119 0.87 -0.5
366,566 + 11487 mRNA_3119 0.88 -0.2
366,729 + -0.5
366,856 + -0.8
366,994 - -1.3
366,995 - -2.6
367,159 + +0.1
367,164 + +0.7
367,165 + -0.6
367,167 + -0.1
367,198 - -0.1
367,201 - +0.1
367,207 + -1.3
367,211 + +0.3
367,317 - +1.8
367,318 + +0.2
367,326 - -0.6
367,329 - +0.2
367,473 - +0.7
367,478 - -0.6
367,501 + +0.2
367,603 - +1.9
367,763 - 11488 mRNA_3120 0.17 -0.1
367,924 - 11488 mRNA_3120 0.25 +0.1
367,933 + 11488 mRNA_3120 0.26 -1.1
367,936 + 11488 mRNA_3120 0.26 +0.4
367,990 - 11488 mRNA_3120 0.29 +2.5
368,006 + 11488 mRNA_3120 0.29 -0.4
368,074 - 11488 mRNA_3120 0.33 +0.4
368,208 + 11488 mRNA_3120 0.40 +0.5
368,242 + 11488 mRNA_3120 0.42 -0.3
368,341 + 11488 mRNA_3120 0.47 +1.8
368,502 + 11488 mRNA_3120 0.55 -0.3
368,540 + 11488 mRNA_3120 0.57 -1.0
368,552 + 11488 mRNA_3120 0.58 +1.3
368,665 - 11488 mRNA_3120 0.64 +0.6
368,683 - 11488 mRNA_3120 0.64 -0.1
368,698 + 11488 mRNA_3120 0.65 -1.0
368,809 - 11488 mRNA_3120 0.71 -0.3
368,918 + 11488 mRNA_3120 0.77 +0.6
368,966 + 11488 mRNA_3120 0.79 +1.1
368,967 + 11488 mRNA_3120 0.79 +1.2
368,975 + 11488 mRNA_3120 0.80 -0.9
369,079 + 11488 mRNA_3120 0.85 +0.5
369,090 + 11488 mRNA_3120 0.86 +0.8
369,227 - +1.8
369,231 - -1.6
369,236 - +0.8
369,237 - +1.3
369,239 + +0.3
369,268 - +1.2
369,302 + +1.1
369,370 - +2.8
369,372 - -0.1
369,394 + +1.4
369,402 - +0.9
369,521 - 11489 mRNA_3121 0.48 +2.3
369,635 + 11489 mRNA_3121 0.85 +0.0
369,665 - +0.6
369,705 + +0.4
369,706 - +0.4
369,710 + -0.0
369,828 - -0.3
369,834 - +0.4
369,968 - +0.6
369,972 - +0.7
369,980 + +1.0
369,994 - +1.1
370,120 - +1.0
370,127 + +0.5
370,128 - +1.7
370,140 - -0.4
370,144 - -0.4
370,145 + -0.8
370,145 + -0.1
370,156 - +1.0
370,159 + -0.4
370,281 - +0.5
370,287 - -0.3
370,336 + +0.7

Or see this region's nucleotide sequence