Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3140

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11507 and 11508 are separated by 509 nucleotides11508 and 11509 are separated by 63 nucleotides mRNA_3139: 11507 - HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729, at 410,271 to 410,837 11507 mRNA_3140: 11508 - BLAST peptide release factor [Melanopsichium pennsylvanicum 4], at 411,347 to 412,227 11508 mRNA_3141: 11509 - HMMPfam-Proline-rich nuclear receptor coactivator-PF15365, at 412,291 to 413,595 11509

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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410,423 - 11507 mRNA_3139 0.27 -0.5
410,460 + 11507 mRNA_3139 0.33 +1.3
410,477 - 11507 mRNA_3139 0.36 +0.5
410,560 + 11507 mRNA_3139 0.51 +2.9
410,576 + 11507 mRNA_3139 0.54 +4.6
410,576 + 11507 mRNA_3139 0.54 +0.8
410,587 + 11507 mRNA_3139 0.56 +2.0
410,593 + 11507 mRNA_3139 0.57 +0.3
410,644 - 11507 mRNA_3139 0.66 +1.6
410,720 + 11507 mRNA_3139 0.79 +0.0
410,758 - 11507 mRNA_3139 0.86 +0.0
410,795 + +0.3
410,798 - +1.1
410,855 + -0.8
410,860 - +1.6
410,866 - +0.8
410,927 + +2.1
410,955 - -1.0
410,963 - +0.2
410,978 - +0.5
410,998 + -0.0
411,007 + +1.2
411,012 - +1.3
411,019 + +0.7
411,021 + +1.8
411,021 + +0.6
411,032 - +0.2
411,045 - +0.4
411,076 + +0.6
411,102 + +1.0
411,118 - -0.3
411,122 - +0.2
411,130 - +0.2
411,141 + -0.5
411,147 + +1.3
411,147 + +0.1
411,155 - -1.7
411,156 - +0.4
411,157 + -0.8
411,163 - +0.5
411,165 - +0.8
411,166 + +0.7
411,168 - -0.7
411,175 + -0.9
411,178 - +1.6
411,180 - +1.6
411,183 + +1.3
411,192 + +1.3
411,193 - -0.2
411,194 - -2.6
411,211 - +0.4
411,218 - -0.3
411,218 - -0.3
411,220 + +1.4
411,231 + +1.6
411,232 - +1.5
411,236 + +0.1
411,237 + -0.3
411,238 + -1.4
411,261 + +1.5
411,262 + -0.9
411,274 + +3.6
411,275 + +1.4
411,276 + -0.7
411,293 - +0.4
411,293 + -0.6
411,295 + -0.1
411,301 - -0.2
411,303 + +0.9
411,310 + -0.0
411,317 - +0.6
411,333 + +0.4
411,381 - -1.0
411,394 + -0.6
411,422 - +3.2
411,435 - 11508 mRNA_3140 0.10 +1.6
411,435 - 11508 mRNA_3140 0.10 +0.5
411,436 + 11508 mRNA_3140 0.10 -0.8
411,437 + 11508 mRNA_3140 0.10 +0.1
411,449 - 11508 mRNA_3140 0.12 +0.3
411,454 + 11508 mRNA_3140 0.12 +0.6
411,588 - 11508 mRNA_3140 0.27 -0.2
411,595 - 11508 mRNA_3140 0.28 +1.1
411,745 + 11508 mRNA_3140 0.45 +1.1
411,770 - 11508 mRNA_3140 0.48 -1.2
411,815 + 11508 mRNA_3140 0.53 -2.2
411,869 + 11508 mRNA_3140 0.59 -0.3
411,872 + 11508 mRNA_3140 0.60 +1.6
411,881 + 11508 mRNA_3140 0.61 +2.3
411,883 - 11508 mRNA_3140 0.61 -0.0
411,883 + 11508 mRNA_3140 0.61 +0.4
411,900 + 11508 mRNA_3140 0.63 +0.0
411,904 - 11508 mRNA_3140 0.63 +0.0
412,004 + 11508 mRNA_3140 0.75 -0.4
412,011 - 11508 mRNA_3140 0.75 +1.1
412,022 - 11508 mRNA_3140 0.77 -0.5
412,036 + 11508 mRNA_3140 0.78 -0.1
412,068 + 11508 mRNA_3140 0.82 +0.3
412,138 - 11508 mRNA_3140 0.90 -0.4
412,163 - -0.8
412,163 - +2.3
412,163 - +0.6
412,177 + -0.0
412,177 + +2.2
412,183 - -0.8
412,186 - -1.4
412,305 - +0.4
412,315 - +1.0
412,317 - +0.5
412,323 + +0.5
412,351 - +1.6
412,352 + -0.0
412,371 + -0.5
412,452 + 11509 mRNA_3141 0.12 +0.7
412,454 - 11509 mRNA_3141 0.12 +1.4
412,494 - 11509 mRNA_3141 0.16 +0.0
412,611 + 11509 mRNA_3141 0.25 +0.3
412,611 - 11509 mRNA_3141 0.25 +2.3
412,611 + 11509 mRNA_3141 0.25 +2.7
412,636 - 11509 mRNA_3141 0.26 +0.8
412,638 + 11509 mRNA_3141 0.27 -0.6
412,640 - 11509 mRNA_3141 0.27 +2.4
412,641 - 11509 mRNA_3141 0.27 +2.2
412,641 + 11509 mRNA_3141 0.27 -0.9
412,650 - 11509 mRNA_3141 0.28 -0.6
412,770 + 11509 mRNA_3141 0.37 +0.1
412,777 - 11509 mRNA_3141 0.37 +0.9
412,782 - 11509 mRNA_3141 0.38 +0.1
412,787 + 11509 mRNA_3141 0.38 +2.0
412,791 + 11509 mRNA_3141 0.38 -0.7
412,793 - 11509 mRNA_3141 0.38 +1.5
412,797 + 11509 mRNA_3141 0.39 +0.4
412,802 - 11509 mRNA_3141 0.39 -0.4
412,803 - 11509 mRNA_3141 0.39 +0.9
412,816 + 11509 mRNA_3141 0.40 +3.1
412,817 + 11509 mRNA_3141 0.40 +0.4
412,953 + 11509 mRNA_3141 0.51 +2.4
412,957 - 11509 mRNA_3141 0.51 +0.1
413,085 + 11509 mRNA_3141 0.61 +0.5

Or see this region's nucleotide sequence