Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3144

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11511 and 11512 are separated by 167 nucleotides11512 and 11513 are separated by 996 nucleotides mRNA_3143: 11511 - K10133 TP53I3 tumor protein p53-inducible protein 3, at 415,939 to 417,358 11511 mRNA_3144: 11512 - Hypothetical Protein, at 417,526 to 421,368 11512 mRNA_3145: 11513 - HMMPfam-haloacid dehalogenase-like hydrolase-PF08282,SUPERFAMILY--SSF56784,TIGRFAM-Cof-subfamily Cof-like hydrolase-TIGR00099,TIGRFAM-HAD-SF-IIB HAD hydrolase, family IIB-TIGR01484, at 422,365 to 423,654 11513

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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416,634 - 11511 mRNA_3143 0.49 +0.6
416,758 - 11511 mRNA_3143 0.58 -0.9
416,791 + 11511 mRNA_3143 0.60 -0.5
416,807 + 11511 mRNA_3143 0.61 +1.0
416,884 - 11511 mRNA_3143 0.67 +1.2
416,914 - 11511 mRNA_3143 0.69 +0.0
416,955 + 11511 mRNA_3143 0.72 -0.1
417,060 - 11511 mRNA_3143 0.79 -1.5
417,093 + 11511 mRNA_3143 0.81 +1.0
417,095 + 11511 mRNA_3143 0.81 +0.4
417,197 - 11511 mRNA_3143 0.89 +1.9
417,214 + 11511 mRNA_3143 0.90 -0.4
417,228 - +0.3
417,239 + -1.3
417,250 - +1.9
417,378 - +0.2
417,383 - +2.4
417,385 + +0.3
417,392 - +1.4
417,392 + +2.0
417,395 - +1.0
417,396 - +0.8
417,396 - +3.4
417,398 - -0.2
417,402 - -0.1
417,405 + -1.6
417,423 + -0.0
417,427 + +1.2
417,431 - +1.0
417,436 - +0.1
417,446 - +0.4
417,449 - -1.6
417,454 + -0.7
417,462 + +2.4
417,463 + +1.1
417,478 + -1.8
417,495 - -0.3
417,557 + -0.7
417,576 + +0.9
417,607 - +0.1
417,609 + -0.0
417,616 - +0.0
417,776 - +0.3
417,777 + +0.2
417,955 + 11512 mRNA_3144 0.11 +0.7
418,097 - 11512 mRNA_3144 0.15 -1.5
418,476 - 11512 mRNA_3144 0.25 +0.6
419,024 - 11512 mRNA_3144 0.39 +2.4
419,439 + 11512 mRNA_3144 0.50 -0.4
420,002 + 11512 mRNA_3144 0.64 -0.1
420,178 - 11512 mRNA_3144 0.69 +1.0
420,278 - 11512 mRNA_3144 0.72 -0.7
420,296 - 11512 mRNA_3144 0.72 -0.8
420,432 + 11512 mRNA_3144 0.76 -0.8
420,644 - 11512 mRNA_3144 0.81 +1.5
420,740 + 11512 mRNA_3144 0.84 -0.5
420,845 - 11512 mRNA_3144 0.86 +0.6
420,911 - 11512 mRNA_3144 0.88 +2.6
420,952 + 11512 mRNA_3144 0.89 +0.0
421,046 - -1.9
421,054 + -0.5
421,068 + +2.0
421,164 - +1.1
421,329 - +0.8
421,438 - +1.5
421,469 - +0.8
421,470 - +2.4
421,476 + +2.8
421,478 - +1.6
421,480 + +0.6
421,494 - +0.0
421,526 - -0.4
421,594 + -0.1
421,596 - +0.9
421,603 - -0.5
421,614 + +0.7
421,617 - +2.0
421,618 + -0.0
421,622 - +0.5
421,622 - +0.1
421,624 - +1.1
421,634 - +0.3
421,652 + +1.9
421,656 + -1.3
421,658 + +1.1
421,660 + -0.4
421,667 + -0.8
421,676 + -0.9
421,717 - +0.1
421,730 + -2.1
421,730 - +1.0
421,732 - +1.0
421,735 + +0.1
421,737 - +0.8
421,738 + +0.4
421,739 + -0.2
421,741 - -1.8
421,747 - -0.9
421,753 - -1.4
421,758 + -1.2
421,759 + +1.1
421,759 + -0.7
421,760 + +0.9
421,760 + -0.1
421,760 + +0.3
421,762 - -0.8
421,763 - +0.9
421,764 - +0.9
421,765 + -0.3
421,766 + -0.2
421,768 + +1.0
421,776 + +0.2
421,779 + +2.1
421,781 + +1.3
421,784 + -0.9
421,793 + +0.7
421,796 - +0.7
421,798 - +2.2
421,798 - -0.1
421,806 - -1.5
421,806 - +0.0
421,811 + +2.0
421,815 + +1.5
421,825 + +0.6
421,833 - +0.2
421,940 + +0.8
421,942 - +1.6
421,956 - +0.2
421,956 - -0.3
421,959 - -1.5
421,963 + +1.2
421,969 - +0.9
421,972 - +1.6
421,981 - +0.5
421,984 - -0.1
421,985 - +0.8
421,997 - -0.3
421,998 + +1.3
421,999 + -0.5
422,002 + -2.9
422,018 - -0.3
422,020 + +1.0
422,020 - +1.7
422,031 + +0.2
422,031 + -0.0
422,040 - +0.5
422,042 + +0.3
422,043 - +1.7
422,044 - +1.2
422,048 + +1.1
422,050 + -0.1
422,051 + +0.7
422,052 + +1.9
422,066 - -0.1
422,072 + +0.6
422,072 - +1.8
422,074 - -3.0
422,075 - +0.5
422,085 + +1.7
422,113 - -2.3
422,132 + +0.1
422,145 + -0.4
422,163 + -1.1
422,165 - -0.3
422,174 + +0.3
422,174 + -1.9
422,188 - -0.2
422,195 - -1.5
422,205 + +0.9
422,207 + -1.5
422,212 - +2.5
422,214 + +0.2
422,221 - +2.0
422,223 - +1.5
422,237 - +1.2
422,255 - +0.2
422,271 + -1.6
422,276 + +0.4
422,280 + +0.6
422,314 - +1.3
422,351 - -1.8
422,364 - -1.5

Or see this region's nucleotide sequence