Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3149

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11516 and 11517 are separated by 769 nucleotides11517 and 11518 are separated by 610 nucleotides mRNA_3148: 11516 - BLAST putative fungal-specific transcription factor [Tricho..., at 429,143 to 430,117 11516 mRNA_3149: 11517 - K17917 SNX1_2 sorting nexin-1/2, at 430,887 to 434,419 11517 mRNA_3150: 11518 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 435,030 to 436,321 11518

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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429,926 - 11516 mRNA_3148 0.80 +0.2
430,048 + +0.9
430,050 + +2.1
430,050 + +0.2
430,054 + +1.5
430,090 - +0.3
430,179 - +2.8
430,180 - -1.9
430,181 - -0.3
430,187 + +1.3
430,191 - -1.2
430,192 + +0.0
430,196 + +1.6
430,198 + -1.0
430,208 + +0.3
430,227 + +1.0
430,227 + -0.3
430,286 - -0.6
430,302 - +0.5
430,308 - -0.3
430,309 + +3.3
430,312 - -0.4
430,317 - +3.0
430,321 - +1.0
430,330 - -2.3
430,340 - +1.7
430,382 - -0.1
430,385 + -0.7
430,393 - +2.7
430,427 - +0.1
430,433 + -0.5
430,448 + -0.1
430,454 - -1.0
430,457 + +0.9
430,458 + +0.8
430,471 - -0.0
430,472 - -1.3
430,477 - +0.1
430,478 + -0.3
430,483 + +0.5
430,484 + -0.2
430,484 + +0.8
430,485 + +0.0
430,485 + +1.4
430,486 + +1.4
430,494 - +0.4
430,494 - -0.4
430,497 + +0.9
430,497 + -1.0
430,497 + -0.9
430,500 + +0.3
430,502 + +0.4
430,526 - +1.1
430,534 - -0.8
430,542 - -0.9
430,542 - -1.5
430,543 - -0.1
430,545 - +0.3
430,545 - +0.4
430,546 + +0.1
430,546 + +0.6
430,546 - -0.0
430,553 - +0.5
430,553 - -0.6
430,553 - -0.1
430,555 - +2.0
430,555 - +3.0
430,557 - +2.3
430,557 - +0.1
430,558 + -2.2
430,558 + +1.4
430,561 + +2.3
430,562 + +0.5
430,567 - +0.0
430,569 - +0.2
430,569 + +0.3
430,569 - -1.8
430,573 - -0.5
430,573 - +0.0
430,573 - -0.3
430,575 - +2.8
430,576 + -0.9
430,577 - -0.3
430,577 + +0.7
430,578 + +1.6
430,579 + +0.1
430,584 - +0.8
430,585 - +0.3
430,587 + +0.3
430,588 + -0.2
430,588 - +0.3
430,593 - +0.2
430,594 + +0.9
430,596 - +0.3
430,596 + -1.6
430,597 + +1.6
430,601 - +1.0
430,605 + -1.4
430,605 - +1.0
430,606 + -0.5
430,606 - -0.5
430,609 - -0.1
430,615 + +0.3
430,620 + -0.4
430,622 + +0.7
430,629 - -1.3
430,638 - +0.5
430,640 - -1.6
430,644 + +0.3
430,644 - +0.2
430,645 - +1.6
430,645 + -0.1
430,646 + +0.8
430,657 - +0.6
430,658 + +1.1
430,670 - +0.2
430,685 - -1.2
430,705 + -0.5
430,707 + +1.4
430,714 - +0.3
430,717 + +1.4
430,723 - +0.2
430,729 + +0.3
430,733 - +0.2
430,741 - +0.8
430,743 - -0.5
430,745 - +0.1
430,745 - +0.2
430,745 - -1.4
430,748 - -2.0
430,748 - +0.1
430,748 - +1.1
430,752 - +1.9
430,752 - +1.5
430,769 + -0.6
430,774 + -0.0
430,794 - -0.0
430,806 - +0.3
430,813 + +1.5
430,821 + +3.0
430,826 + +0.9
430,828 + +0.1
430,830 - +1.9
430,832 - +1.5
430,835 + -1.3
430,835 + -0.7
430,836 - -0.6
430,837 + +2.0
430,838 + -1.0
430,845 - +1.4
430,846 - +1.3
430,847 + +1.2
430,849 - +0.1
430,850 + -0.1
430,852 - -0.9
430,852 - +0.6
430,853 - +0.3
430,853 - +1.3
430,857 + +1.9
430,868 - +1.2
430,871 - +1.3
430,872 - +0.6
430,872 + +1.8
430,874 - -0.0
430,874 - +1.1
430,876 + +1.2
430,876 - -0.7
430,877 + +1.0
430,877 + +2.8
430,877 - +0.7
430,881 - -0.4
430,882 + -1.6
430,884 + +2.0
430,887 + +0.4
430,894 - +0.6
430,908 - -0.1
430,909 - +1.1
430,911 - +1.1
430,921 - +1.0
430,923 - +1.5
430,924 + +0.9
430,924 + +2.4
430,928 - -0.5
430,930 - -1.1
430,937 + +1.9
430,938 + -0.2
430,940 + -0.4
430,940 + -2.4
430,941 + +0.8
430,951 + +0.5
430,956 + -0.1
430,962 - -0.1
430,964 - +0.1
430,964 + +2.8
430,964 - -0.7
430,968 - -0.1
430,970 + +1.3
430,974 + +0.3
430,976 + -0.3
430,977 + -0.1
430,978 - -0.4
430,978 - -0.1
430,978 - +1.1
430,979 + -0.5
430,979 + +1.0
430,999 + +0.5
431,003 - +0.5
431,003 - -0.9
431,008 - +0.0
431,010 - -0.2
431,012 - -2.9
431,012 - +1.1
431,016 - +0.5
431,016 - +0.8
431,023 + +0.1
431,024 - -1.5
431,027 - -1.2
431,028 + -0.3
431,029 - -0.3
431,031 - +0.6
431,031 - +0.6
431,032 + +0.6
431,033 - +2.0
431,040 - +0.5
431,041 + -0.3
431,049 + +1.4
431,052 - -0.6
431,052 - +1.3
431,063 - +2.8
431,065 - +0.5
431,066 + +1.2
431,066 + -0.1
431,084 - -0.8
431,087 - +0.4
431,089 + -0.5
431,101 - +0.0
431,110 - +0.6
431,110 + +1.9
431,114 + +0.8
431,120 - -0.6
431,120 + +0.2
431,122 - -1.4
431,143 - +0.1
431,150 - +1.4
431,158 - -1.2
431,159 - -0.3
431,169 - +0.0
431,190 + +0.4
431,193 + -1.8
431,196 - +0.1
431,214 - -0.9
431,237 - -0.9
431,244 + 11517 mRNA_3149 0.10 +0.3
431,265 - 11517 mRNA_3149 0.11 +0.2
431,275 + 11517 mRNA_3149 0.11 -0.1
431,285 + 11517 mRNA_3149 0.11 +0.1
431,298 - 11517 mRNA_3149 0.12 +1.4
431,310 - 11517 mRNA_3149 0.12 +0.7
431,310 - 11517 mRNA_3149 0.12 -1.2
431,322 - 11517 mRNA_3149 0.12 +0.4
431,323 - 11517 mRNA_3149 0.12 +1.7
431,332 + 11517 mRNA_3149 0.13 -0.9
431,351 + 11517 mRNA_3149 0.13 +0.5
431,376 + 11517 mRNA_3149 0.14 -1.0
431,456 - 11517 mRNA_3149 0.16 -0.5
431,471 + 11517 mRNA_3149 0.17 +1.6
431,482 - 11517 mRNA_3149 0.17 -1.4
431,487 - 11517 mRNA_3149 0.17 +1.4
431,487 - 11517 mRNA_3149 0.17 +1.7
431,516 + 11517 mRNA_3149 0.18 +0.8
431,605 + 11517 mRNA_3149 0.20 +1.5
431,608 - 11517 mRNA_3149 0.20 +1.5
431,614 - 11517 mRNA_3149 0.21 -1.2
431,625 - 11517 mRNA_3149 0.21 +0.1
431,626 + 11517 mRNA_3149 0.21 +0.5
431,735 + 11517 mRNA_3149 0.24 +1.2
431,765 - 11517 mRNA_3149 0.25 +0.2
431,899 - 11517 mRNA_3149 0.29 -1.1
431,920 - 11517 mRNA_3149 0.29 +2.1
432,051 + 11517 mRNA_3149 0.33 -2.6
432,058 - 11517 mRNA_3149 0.33 +2.5
432,090 - 11517 mRNA_3149 0.34 +2.8
432,196 + 11517 mRNA_3149 0.37 +0.2
432,310 + 11517 mRNA_3149 0.40 +1.2
432,349 + 11517 mRNA_3149 0.41 +0.0
432,361 + 11517 mRNA_3149 0.42 -0.7
432,471 + 11517 mRNA_3149 0.45 +0.1
432,513 - 11517 mRNA_3149 0.46 +0.8
432,747 - 11517 mRNA_3149 0.53 +1.5
432,778 - 11517 mRNA_3149 0.54 -0.8
432,788 + 11517 mRNA_3149 0.54 +0.2
432,790 - 11517 mRNA_3149 0.54 -0.7
432,800 + 11517 mRNA_3149 0.54 -0.3
432,883 - 11517 mRNA_3149 0.56 -1.0
432,886 - 11517 mRNA_3149 0.57 +1.1
432,887 + 11517 mRNA_3149 0.57 -0.6
432,929 + 11517 mRNA_3149 0.58 +0.4
432,945 - 11517 mRNA_3149 0.58 -0.8
432,959 - 11517 mRNA_3149 0.59 -0.4
432,969 + 11517 mRNA_3149 0.59 -2.1
433,396 + 11517 mRNA_3149 0.71 +0.0
433,575 - 11517 mRNA_3149 0.76 -0.1
433,800 + 11517 mRNA_3149 0.82 +0.2
433,811 - 11517 mRNA_3149 0.83 +0.0
433,814 + 11517 mRNA_3149 0.83 -0.1
433,814 - 11517 mRNA_3149 0.83 +0.2
434,112 + +1.6
434,119 - +0.9
434,238 - -0.3
434,255 - +1.5
434,278 - -0.4
434,296 - -0.1
434,379 + -1.6
434,393 + +3.4
434,395 + +0.3
434,395 - +0.5
434,399 - +1.0
434,400 - -1.5
434,514 - -0.7
434,518 + +1.2
434,524 + +0.0
434,531 - +1.1
434,541 + +3.3
434,544 + +0.4
434,544 - +1.3
434,644 - +0.2
434,665 + -1.0
434,671 + +0.5
434,672 - -0.9
434,675 - -1.3
434,677 - +0.7
434,689 - -0.5
434,689 + -0.6
434,691 + +0.1
434,694 + +0.0
434,699 + +0.9
434,720 - +0.1
434,757 - +0.8
434,817 - +0.8
434,819 + -0.0
434,836 + +2.0
434,865 + +1.0
434,978 + +1.4
434,983 - -0.1
434,992 + +0.4
434,997 - -0.1
435,105 - +0.2
435,109 - +0.2
435,123 - -0.9
435,407 + 11518 mRNA_3150 0.29 +0.2

Or see this region's nucleotide sequence