Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiment: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11537 and 11538 are separated by 647 nucleotides mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1,526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2,174 to 3,237 11538

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
12 + +0.8
12 + +0.9
15 + +1.0
16 + +0.5
18 + +2.5
22 + -1.9
25 + +1.0
57 - -2.0
61 - +1.0
62 + +0.3
62 + +0.1
66 + +1.2
72 + +2.2
72 + -0.5
72 + +1.1
75 + -0.6
78 - +0.8
105 + -0.5
110 - -2.1
114 + +0.3
115 + +1.1
118 + +1.0
122 + -0.4
122 - +0.3
124 + +0.7
135 + -1.0
147 + -0.4
157 + -0.2
161 + -0.6
168 + -1.5
174 + -0.5
177 - +0.4
228 + +3.1
247 + +0.9
252 - +1.6
253 - +0.4
255 + +0.9
258 + -0.3
264 - +1.1
269 + -0.5
269 - +0.7
274 + -0.5
275 - -0.7
277 + -1.8
280 + +2.7
280 + -2.5
283 - +0.3
285 - +0.0
287 + +1.4
287 + +0.4
288 + +0.7
292 - +0.4
293 + +1.1
298 + +0.9
305 - -0.4
314 + +0.8
320 + +1.1
368 + +2.1
370 - -2.5
372 + +0.3
382 + +0.7
384 + +0.2
391 + -0.6
391 - +2.5
397 + +1.8
397 - +1.1
402 + -0.5
405 + +0.5
423 - +0.6
430 + +1.2
440 + -0.1
446 + -0.1
470 + -0.6
524 + +0.6
532 + +0.5
545 - +0.2
557 + +1.5
569 + +1.6
570 - +0.0
583 + +0.6
584 + -1.4
603 - -0.6
603 + +1.0
634 - 11537 mRNA_3169 0.11 +1.2
636 + 11537 mRNA_3169 0.11 +1.4
646 + 11537 mRNA_3169 0.12 +0.6
661 + 11537 mRNA_3169 0.13 -0.2
667 + 11537 mRNA_3169 0.14 -0.4
698 + 11537 mRNA_3169 0.17 +0.2
704 - 11537 mRNA_3169 0.18 +1.5
705 - 11537 mRNA_3169 0.18 -1.6
721 - 11537 mRNA_3169 0.19 +0.4
725 + 11537 mRNA_3169 0.20 -1.2
738 - 11537 mRNA_3169 0.21 +1.1
849 + 11537 mRNA_3169 0.32 +1.8
871 + 11537 mRNA_3169 0.34 +1.6
883 + 11537 mRNA_3169 0.35 +0.3
894 + 11537 mRNA_3169 0.37 +0.3
895 + 11537 mRNA_3169 0.37 +1.3
922 + 11537 mRNA_3169 0.39 +1.6
965 - 11537 mRNA_3169 0.44 -0.6
1,012 - 11537 mRNA_3169 0.48 -1.0
1,026 + 11537 mRNA_3169 0.50 +0.9
1,026 + 11537 mRNA_3169 0.50 -0.8
1,105 + 11537 mRNA_3169 0.58 -0.7
1,123 + 11537 mRNA_3169 0.60 -3.6
1,141 + 11537 mRNA_3169 0.61 +1.8
1,142 + 11537 mRNA_3169 0.61 +3.6
1,165 + 11537 mRNA_3169 0.64 -0.0
1,174 - 11537 mRNA_3169 0.65 +1.0
1,174 + 11537 mRNA_3169 0.65 +2.0
1,259 + 11537 mRNA_3169 0.73 +0.5
1,265 + 11537 mRNA_3169 0.74 -0.3
1,268 + 11537 mRNA_3169 0.74 -0.2
1,269 - 11537 mRNA_3169 0.74 +0.4
1,288 - 11537 mRNA_3169 0.76 +2.1
1,297 + 11537 mRNA_3169 0.77 -1.0
1,303 - 11537 mRNA_3169 0.78 +0.1
1,399 + 11537 mRNA_3169 0.87 +0.1
1,412 - 11537 mRNA_3169 0.88 +0.5
1,419 - 11537 mRNA_3169 0.89 +0.3
1,423 - 11537 mRNA_3169 0.90 -0.9
1,429 - +0.7
1,453 + +0.2
1,459 + +0.1
1,459 + -0.2
1,460 - +0.7
1,461 + +1.4
1,462 + +1.3
1,467 + +1.2
1,470 - +3.5
1,474 - +0.7
1,485 + -0.8
1,520 + +0.5
1,523 + +0.8
1,531 - +1.2
1,537 + +1.7
1,541 + -1.7
1,562 + -0.5
1,567 + +0.2
1,572 + -1.3
1,582 - +1.9
1,584 - +0.9
1,589 + -0.8
1,596 - +0.4
1,601 - -2.1
1,602 + -0.1
1,605 + -1.5
1,609 + -0.3
1,616 + +0.7
1,636 + +0.8
1,654 + +1.1
1,656 - +3.7
1,666 + +0.4
1,675 - -1.3
1,682 - +0.6
1,697 - +0.5
1,709 + +0.0
1,709 - +1.0
1,711 + -0.7
1,718 - -0.5
1,719 + -0.6
1,722 - +0.6
1,723 + +0.8
1,725 - +0.2
1,725 - +1.9
1,727 + +0.9
1,730 + +0.3
1,731 + -0.6
1,732 + +1.0
1,732 + +0.3
1,734 + -2.6
1,734 + +1.8
1,734 + +2.3
1,739 - +0.8
1,740 + -0.8
1,744 - -0.4
1,747 + +0.3
1,749 + +1.4
1,759 + -0.5
1,759 + +1.3
1,759 + -0.3
1,761 + +1.8
1,763 + +1.4
1,765 + +1.3
1,767 + +0.6
1,769 + +0.2
1,772 + +0.5
1,772 + +0.5
1,774 + +2.3
1,774 + -0.9
1,775 + +0.6
1,776 - +0.5
1,776 + +0.3
1,777 + +0.6
1,778 + +1.1
1,778 - -0.2
1,781 - -0.1
1,783 - +1.3
1,783 - +0.7
1,783 - +2.9
1,783 - -0.1
1,784 + +0.9
1,789 + +0.1
1,789 - -0.2
1,791 + +0.3
1,792 + +1.6
1,793 + -0.8
1,795 + -0.7
1,796 + +0.6
1,796 - +0.8
1,798 + +1.5
1,800 + +1.3
1,801 + +4.5
1,805 + +0.3
1,805 + -0.7
1,807 + +0.4
1,813 - -1.0
1,814 + +0.9
1,814 + -1.7
1,818 - -0.9
1,851 - +0.7
1,874 + +0.1
1,881 - +1.2
1,885 - -0.3
1,891 - +1.9
1,896 - +0.2
1,912 + -0.3
1,912 + +0.0
1,914 - +1.1
1,916 - -0.9
1,917 - -0.3
1,919 + +3.0
1,922 - -0.3
1,923 - +0.8
1,934 - +0.6
1,935 + +0.7
1,938 - +0.3
1,938 - +0.6
1,940 - -0.2
1,941 + +1.6
1,941 + +1.5
1,942 + +0.8
1,943 - -0.1
1,944 + +0.8
1,944 - +2.0
1,945 - +1.2
1,945 + +0.0
1,946 - +0.6
1,947 + +0.5
1,960 - +0.2
1,968 + +0.9
1,980 + -2.2
2,015 + +2.2
2,067 - +2.2
2,081 - -1.7
2,091 + +0.2
2,220 + +0.3
2,229 - +2.0
2,235 - -1.3
2,237 - -0.8
2,242 + +2.4
2,242 - -0.0
2,245 - -0.0
2,248 - +0.9
2,251 + -2.6
2,254 - +0.5
2,261 + -1.3
2,262 - +1.1
2,266 + +2.5
2,268 + +0.0
2,400 + 11538 mRNA_3170 0.21 -0.3
2,401 - 11538 mRNA_3170 0.21 -1.5
2,404 + 11538 mRNA_3170 0.22 -1.2
2,414 + 11538 mRNA_3170 0.23 -0.8
2,420 - 11538 mRNA_3170 0.23 +2.9
2,439 + 11538 mRNA_3170 0.25 +2.6
2,446 + 11538 mRNA_3170 0.26 +2.1
2,470 - 11538 mRNA_3170 0.28 -0.1
2,516 - 11538 mRNA_3170 0.32 +0.5

Or see this region's nucleotide sequence