Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3170

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11537 and 11538 are separated by 647 nucleotides11538 and 11539 are separated by 847 nucleotides mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1,526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2,174 to 3,237 11538 mRNA_3171: 11539 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048, at 4,085 to 5,766 11539

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,174 - 11537 mRNA_3169 0.65 +1.0
1,174 + 11537 mRNA_3169 0.65 +2.0
1,259 + 11537 mRNA_3169 0.73 +0.5
1,265 + 11537 mRNA_3169 0.74 -0.3
1,268 + 11537 mRNA_3169 0.74 -0.2
1,269 - 11537 mRNA_3169 0.74 +0.4
1,288 - 11537 mRNA_3169 0.76 +2.1
1,297 + 11537 mRNA_3169 0.77 -1.0
1,303 - 11537 mRNA_3169 0.78 +0.1
1,399 + 11537 mRNA_3169 0.87 +0.1
1,412 - 11537 mRNA_3169 0.88 +0.5
1,419 - 11537 mRNA_3169 0.89 +0.3
1,423 - 11537 mRNA_3169 0.90 -0.9
1,429 - +0.7
1,453 + +0.2
1,459 + +0.1
1,459 + -0.2
1,460 - +0.7
1,461 + +1.4
1,462 + +1.3
1,467 + +1.2
1,470 - +3.5
1,474 - +0.7
1,485 + -0.8
1,520 + +0.5
1,523 + +0.8
1,531 - +1.2
1,537 + +1.7
1,541 + -1.7
1,562 + -0.5
1,567 + +0.2
1,572 + -1.3
1,582 - +1.9
1,584 - +0.9
1,589 + -0.8
1,596 - +0.4
1,601 - -2.1
1,602 + -0.1
1,605 + -1.5
1,609 + -0.3
1,616 + +0.7
1,636 + +0.8
1,654 + +1.1
1,656 - +3.7
1,666 + +0.4
1,675 - -1.3
1,682 - +0.6
1,697 - +0.5
1,709 + +0.0
1,709 - +1.0
1,711 + -0.7
1,718 - -0.5
1,719 + -0.6
1,722 - +0.6
1,723 + +0.8
1,725 - +0.2
1,725 - +1.9
1,727 + +0.9
1,730 + +0.3
1,731 + -0.6
1,732 + +1.0
1,732 + +0.3
1,734 + -2.6
1,734 + +1.8
1,734 + +2.3
1,739 - +0.8
1,740 + -0.8
1,744 - -0.4
1,747 + +0.3
1,749 + +1.4
1,759 + -0.5
1,759 + +1.3
1,759 + -0.3
1,761 + +1.8
1,763 + +1.4
1,765 + +1.3
1,767 + +0.6
1,769 + +0.2
1,772 + +0.5
1,772 + +0.5
1,774 + +2.3
1,774 + -0.9
1,775 + +0.6
1,776 - +0.5
1,776 + +0.3
1,777 + +0.6
1,778 + +1.1
1,778 - -0.2
1,781 - -0.1
1,783 - +1.3
1,783 - +0.7
1,783 - +2.9
1,783 - -0.1
1,784 + +0.9
1,789 + +0.1
1,789 - -0.2
1,791 + +0.3
1,792 + +1.6
1,793 + -0.8
1,795 + -0.7
1,796 + +0.6
1,796 - +0.8
1,798 + +1.5
1,800 + +1.3
1,801 + +4.5
1,805 + +0.3
1,805 + -0.7
1,807 + +0.4
1,813 - -1.0
1,814 + +0.9
1,814 + -1.7
1,818 - -0.9
1,851 - +0.7
1,874 + +0.1
1,881 - +1.2
1,885 - -0.3
1,891 - +1.9
1,896 - +0.2
1,912 + -0.3
1,912 + +0.0
1,914 - +1.1
1,916 - -0.9
1,917 - -0.3
1,919 + +3.0
1,922 - -0.3
1,923 - +0.8
1,934 - +0.6
1,935 + +0.7
1,938 - +0.3
1,938 - +0.6
1,940 - -0.2
1,941 + +1.6
1,941 + +1.5
1,942 + +0.8
1,943 - -0.1
1,944 + +0.8
1,944 - +2.0
1,945 - +1.2
1,945 + +0.0
1,946 - +0.6
1,947 + +0.5
1,960 - +0.2
1,968 + +0.9
1,980 + -2.2
2,015 + +2.2
2,067 - +2.2
2,081 - -1.7
2,091 + +0.2
2,220 + +0.3
2,229 - +2.0
2,235 - -1.3
2,237 - -0.8
2,242 + +2.4
2,242 - -0.0
2,245 - -0.0
2,248 - +0.9
2,251 + -2.6
2,254 - +0.5
2,261 + -1.3
2,262 - +1.1
2,266 + +2.5
2,268 + +0.0
2,400 + 11538 mRNA_3170 0.21 -0.3
2,401 - 11538 mRNA_3170 0.21 -1.5
2,404 + 11538 mRNA_3170 0.22 -1.2
2,414 + 11538 mRNA_3170 0.23 -0.8
2,420 - 11538 mRNA_3170 0.23 +2.9
2,439 + 11538 mRNA_3170 0.25 +2.6
2,446 + 11538 mRNA_3170 0.26 +2.1
2,470 - 11538 mRNA_3170 0.28 -0.1
2,516 - 11538 mRNA_3170 0.32 +0.5
2,550 - 11538 mRNA_3170 0.35 +2.2
2,553 + 11538 mRNA_3170 0.36 +0.5
2,569 + 11538 mRNA_3170 0.37 -0.0
2,573 - 11538 mRNA_3170 0.38 -1.8
2,581 + 11538 mRNA_3170 0.38 +2.0
2,582 + 11538 mRNA_3170 0.38 +0.7
2,611 + 11538 mRNA_3170 0.41 +2.2
2,698 + 11538 mRNA_3170 0.49 +1.1
2,699 + 11538 mRNA_3170 0.49 +0.1
2,755 + 11538 mRNA_3170 0.55 +1.6
2,853 + 11538 mRNA_3170 0.64 +1.0
3,014 - 11538 mRNA_3170 0.79 -0.4
3,407 - +0.9
3,547 - +0.2
3,604 + +0.3
3,607 + -0.4
3,739 - +0.2
3,768 + -2.5
4,061 + +0.4
4,136 - +1.4
4,162 + -1.5
4,176 + +1.1

Or see this region's nucleotide sequence