Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3186

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11553 and 11554 are separated by 92 nucleotides11554 and 11555 are separated by 444 nucleotides mRNA_3185: 11553 - KOG1577 Aldo/keto reductase family proteins, at 40,241 to 41,550 11553 mRNA_3186: 11554 - KOG4444 Peroxisomal assembly protein PEX3, at 41,643 to 43,993 11554 mRNA_3187: 11555 - BLAST Protein disulfide-isomerase erp38 [Hypsizygus marmoreus], at 44,438 to 45,168 11555

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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40,751 + 11553 mRNA_3185 0.39 +0.2
40,765 + 11553 mRNA_3185 0.40 +1.6
40,768 + 11553 mRNA_3185 0.40 -0.3
40,776 - 11553 mRNA_3185 0.41 -0.6
40,786 - 11553 mRNA_3185 0.42 +1.3
40,921 + 11553 mRNA_3185 0.52 +2.3
41,055 - 11553 mRNA_3185 0.62 -0.3
41,231 + 11553 mRNA_3185 0.76 -0.4
41,345 + 11553 mRNA_3185 0.84 +0.9
41,471 - +0.9
41,655 + -1.8
43,462 - 11554 mRNA_3186 0.77 +1.1
44,021 + -0.9
44,125 - -0.9
44,133 - -0.0
44,161 - +0.6
44,186 - -0.8
44,198 + +0.3
44,319 + +0.5
44,606 + 11555 mRNA_3187 0.23 -0.3
44,635 + 11555 mRNA_3187 0.27 -1.5
44,751 - 11555 mRNA_3187 0.43 +1.4
44,783 - 11555 mRNA_3187 0.47 -2.3
44,901 - 11555 mRNA_3187 0.63 +1.2

Or see this region's nucleotide sequence