Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3201

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11568 and 11569 are separated by 199 nucleotides11569 and 11570 are separated by 476 nucleotides mRNA_3200: 11568 - KOG1515 Arylacetamide deacetylase, at 73,993 to 76,977 11568 mRNA_3201: 11569 - K12175 GPS1, COPS1, CSN1 COP9 signalosome complex subunit 1, at 77,177 to 79,098 11569 mRNA_3202: 11570 - KOG2533 Permease of the major facilitator superfamily, at 79,575 to 81,413 11570

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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76,341 - 11568 mRNA_3200 0.79 -0.1
76,346 - 11568 mRNA_3200 0.79 -0.7
76,397 + 11568 mRNA_3200 0.81 -0.3
76,460 - 11568 mRNA_3200 0.83 +0.8
76,649 + 11568 mRNA_3200 0.89 +1.4
76,954 - -0.2
76,966 - +0.6
76,976 + -0.4
76,992 - -0.6
76,992 - +0.3
76,992 - -0.3
76,999 + -0.5
77,084 - +1.2
77,240 - +0.6
77,250 - +0.2
77,369 - -0.3
77,380 + 11569 mRNA_3201 0.11 -0.1
77,649 - 11569 mRNA_3201 0.25 +2.3
77,832 + 11569 mRNA_3201 0.34 +1.1
77,883 + 11569 mRNA_3201 0.37 +0.0
78,842 + 11569 mRNA_3201 0.87 +0.5
78,994 + -0.2
78,999 - +0.3
79,279 - +0.1
79,285 - +2.0
79,346 - +0.9
79,467 + -0.9
79,968 + 11570 mRNA_3202 0.21 +0.1

Or see this region's nucleotide sequence