Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3219

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11587 and 11588 are separated by 192 nucleotides mRNA_3219: 11587 - HMMPfam-RNase H-PF00075,ProSiteProfiles-RNase H domain profile.-PS50879,SUPERFAMILY--SSF53098, at 125,577 to 131,824 11587 mRNA_3220: 11588 - KOG0686 COP9 signalosome, subunit CSN1, at 132,017 to 133,130 11588

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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125,673 + +2.2
125,824 - +0.6
125,836 - +2.4
125,972 - +0.4
126,004 + +1.3
126,140 + -0.1
126,148 - +0.8
126,150 - -1.3
126,153 - +0.6
126,160 - +0.9
126,172 - +0.2
126,280 + 11587 mRNA_3219 0.11 +2.2
126,306 - 11587 mRNA_3219 0.12 +1.4
126,484 + 11587 mRNA_3219 0.15 -0.3
126,492 + 11587 mRNA_3219 0.15 -1.3
126,510 + 11587 mRNA_3219 0.15 +1.5
126,602 + 11587 mRNA_3219 0.16 +1.4
127,343 + 11587 mRNA_3219 0.28 +0.8
127,504 - 11587 mRNA_3219 0.31 +0.7
127,528 - 11587 mRNA_3219 0.31 +2.7
127,528 - 11587 mRNA_3219 0.31 +1.5
127,528 + 11587 mRNA_3219 0.31 +0.1
127,533 + 11587 mRNA_3219 0.31 +2.1
127,539 - 11587 mRNA_3219 0.31 +1.7
127,554 + 11587 mRNA_3219 0.32 +0.9
127,567 + 11587 mRNA_3219 0.32 +0.5
127,570 + 11587 mRNA_3219 0.32 +1.6
127,580 + 11587 mRNA_3219 0.32 -1.3
127,585 + 11587 mRNA_3219 0.32 +2.1
127,588 - 11587 mRNA_3219 0.32 -0.5
127,608 + 11587 mRNA_3219 0.33 -0.4
127,617 + 11587 mRNA_3219 0.33 -0.9
127,703 + 11587 mRNA_3219 0.34 -0.3
127,711 + 11587 mRNA_3219 0.34 -1.3
127,715 + 11587 mRNA_3219 0.34 +3.4
127,748 + 11587 mRNA_3219 0.35 +0.5
127,880 - 11587 mRNA_3219 0.37 +1.9
127,911 - 11587 mRNA_3219 0.37 +2.9
128,006 + 11587 mRNA_3219 0.39 +2.7
128,026 - 11587 mRNA_3219 0.39 +0.5
128,038 + 11587 mRNA_3219 0.39 +0.4
128,149 - 11587 mRNA_3219 0.41 -0.2
128,173 + 11587 mRNA_3219 0.42 -0.2
128,693 - 11587 mRNA_3219 0.50 +0.9
128,722 + 11587 mRNA_3219 0.50 +0.2
128,988 + 11587 mRNA_3219 0.55 +0.6
129,000 + 11587 mRNA_3219 0.55 -0.5
129,005 + 11587 mRNA_3219 0.55 +0.1
129,265 - 11587 mRNA_3219 0.59 +1.3
129,563 + 11587 mRNA_3219 0.64 -0.1
129,591 - 11587 mRNA_3219 0.64 -0.4
130,455 - 11587 mRNA_3219 0.78 +1.5
130,458 - 11587 mRNA_3219 0.78 +1.7
130,972 + 11587 mRNA_3219 0.86 -1.7
131,128 - 11587 mRNA_3219 0.89 +0.8
131,459 - -0.1
131,602 - +0.3
131,964 + -1.5
132,026 - +0.7
132,346 - 11588 mRNA_3220 0.30 -0.4
132,384 - 11588 mRNA_3220 0.33 -0.9
132,395 - 11588 mRNA_3220 0.34 +1.8

Or see this region's nucleotide sequence