Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3245

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11612 and 11613 are separated by 459 nucleotides mRNA_3244: 11612 - Hypothetical Protein, at 199,306 to 200,606 11612 mRNA_3245: 11613 - HMMPfam-Fungal protein of unknown function (DUF1752)-PF08550,HMMPfam-Protein of unknown function (DUF3295)-PF11702, at 201,066 to 204,037 11613

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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200,108 + 11612 mRNA_3244 0.62 +1.8
200,206 + 11612 mRNA_3244 0.69 -1.7
200,479 + +0.2
200,500 - +0.4
200,515 - +0.1
200,553 - -0.1
200,597 + +1.6
201,006 - +2.4
201,130 - +0.3
202,039 + 11613 mRNA_3245 0.33 +0.1
202,325 + 11613 mRNA_3245 0.42 -0.7
202,630 + 11613 mRNA_3245 0.53 +0.7
202,767 - 11613 mRNA_3245 0.57 +0.4
203,376 - 11613 mRNA_3245 0.78 -0.1
203,509 + 11613 mRNA_3245 0.82 +1.4
203,657 - 11613 mRNA_3245 0.87 -0.5
203,661 + 11613 mRNA_3245 0.87 +0.8
203,790 - -0.9
203,799 - +0.2
203,946 + +1.9
203,947 + -0.5
204,103 - -1.3
204,225 - -0.1
204,225 - -0.6
204,225 - +0.6
204,234 - +0.4
204,235 - -0.1
204,238 + +2.8
204,250 - +0.3
204,251 + +2.9
204,270 + -0.1
204,278 + +0.2
204,280 + +4.6
204,286 - -0.0
204,290 - +1.0
204,291 - -0.1
204,298 + -0.3
204,314 + +1.2
204,335 - -1.1
204,357 - +0.5
204,383 - +0.2
204,393 - +1.9
204,412 + -0.5
204,437 - -0.4
204,443 - +2.0
204,445 + +2.6
204,447 - -3.0
204,448 + +1.6
204,448 - +0.2
204,454 + +0.2
204,454 + +0.6
204,455 - -0.1
204,463 + -0.0
204,468 - -0.3
204,473 + +1.0
204,479 + +3.2
204,484 - +2.0
204,491 - +0.6
204,511 - +0.1
204,528 - -0.4
204,534 - +0.0
204,547 - +0.5
204,557 + +2.3
204,639 + +0.9
204,647 + -2.2
204,652 - +0.6
204,654 + -0.7
204,664 - -0.0
204,665 + +2.0
204,678 + +0.4
204,695 + -0.1
204,699 + +0.3
204,724 - -1.6
204,727 + +0.7
204,801 - -0.2
204,811 + +1.7
204,826 + +1.3
204,957 - -0.1

Or see this region's nucleotide sequence