Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3263

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11630 and 11631 are separated by 103 nucleotides11631 and 11632 are separated by 264 nucleotides mRNA_3262: 11630 - SUPERFAMILY--SSF47616, at 239,833 to 240,831 11630 mRNA_3263: 11631 - BLAST Receptor-activated Ca2+-permeable cation channel [Rho..., at 240,935 to 243,648 11631 mRNA_3264: 11632 - K08495 GOSR1, GOS1 golgi SNAP receptor complex member 1, at 243,913 to 244,924 11632

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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240,055 - 11630 mRNA_3262 0.22 -0.2
240,981 - +1.1
241,064 + +0.2
241,230 - 11631 mRNA_3263 0.11 +1.4
241,673 + 11631 mRNA_3263 0.27 -0.8
241,675 + 11631 mRNA_3263 0.27 +0.3
241,701 + 11631 mRNA_3263 0.28 -0.7
241,822 - 11631 mRNA_3263 0.33 +0.3
241,986 - 11631 mRNA_3263 0.39 +0.8
242,129 - 11631 mRNA_3263 0.44 -0.6
242,255 - 11631 mRNA_3263 0.49 -1.1
242,287 + 11631 mRNA_3263 0.50 -0.5
242,552 + 11631 mRNA_3263 0.60 +0.4
242,556 - 11631 mRNA_3263 0.60 +1.5
242,698 - 11631 mRNA_3263 0.65 +1.5
242,720 + 11631 mRNA_3263 0.66 +1.5
242,846 - 11631 mRNA_3263 0.70 +1.0
242,994 + 11631 mRNA_3263 0.76 -0.0
242,999 - 11631 mRNA_3263 0.76 +0.3
243,028 + 11631 mRNA_3263 0.77 -1.7
243,030 + 11631 mRNA_3263 0.77 +0.1
243,584 + -0.3
243,584 + -0.1
243,757 + +0.6
243,865 - -0.7

Or see this region's nucleotide sequence