Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3293

Experiment: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11661 and 11662 are separated by 13 nucleotides mRNA_3293: 11661 - K01440 PNC1 nicotinamidase, at 318,203 to 319,692 11661 mRNA_3294: 11662 - K20368 CNIH, ERV14 protein cornichon, at 319,706 to 321,575 11662

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
317,285 - -1.1
317,319 + -0.4
317,331 + +0.4
317,418 - -0.3
317,488 + +1.1
317,492 - +3.0
317,788 + -0.8
317,890 + +1.1
317,931 - +1.5
317,946 - +1.3
317,954 - +0.6
318,113 + +0.7
318,128 + +1.3
318,137 - -0.1
318,148 + +0.2
318,234 - +3.3
318,248 - +1.3
318,249 + +1.1
318,255 + +0.9
318,257 - +0.5
318,257 + +1.4
318,271 - -0.3
318,272 + -0.2
318,277 + +0.2
318,417 - 11661 mRNA_3293 0.14 +2.9
318,425 + 11661 mRNA_3293 0.15 +3.4
318,431 + 11661 mRNA_3293 0.15 +0.3
318,435 + 11661 mRNA_3293 0.16 +0.6
318,451 + 11661 mRNA_3293 0.17 +0.6
318,454 + 11661 mRNA_3293 0.17 -1.2
318,574 - 11661 mRNA_3293 0.25 -1.1
318,577 - 11661 mRNA_3293 0.25 -0.0
318,690 - 11661 mRNA_3293 0.33 +2.2
318,773 + 11661 mRNA_3293 0.38 +1.5
318,774 + 11661 mRNA_3293 0.38 -0.3
319,142 - 11661 mRNA_3293 0.63 +1.3
319,157 + 11661 mRNA_3293 0.64 +0.9
319,309 + 11661 mRNA_3293 0.74 -1.2
319,322 - 11661 mRNA_3293 0.75 -1.3
319,333 + 11661 mRNA_3293 0.76 +0.6
319,334 + 11661 mRNA_3293 0.76 +0.2
319,853 + +0.3

Or see this region's nucleotide sequence