Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3328

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11695 and 11696 are separated by 133 nucleotides11696 and 11697 are separated by 350 nucleotides mRNA_3327: 11695 - HMMPfam-BAG domain-PF02179,SUPERFAMILY--SSF63491, at 402,652 to 404,277 11695 mRNA_3328: 11696 - BLAST YALIA101S10e03422g1_1 [Yarrowia lipolytica], at 404,411 to 405,058 11696 mRNA_3329: 11697 - Hypothetical Protein, at 405,409 to 406,722 11697

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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403,611 + 11695 mRNA_3327 0.59 -1.4
404,042 - 11695 mRNA_3327 0.85 +0.3
404,165 + -0.1
404,188 - +0.1
404,220 + +1.5
404,353 - +2.5
404,494 + 11696 mRNA_3328 0.13 +0.5
404,498 + 11696 mRNA_3328 0.13 -1.1
405,367 + +0.4
405,503 - +0.2
405,529 + +0.8
405,530 + +0.3
405,956 + 11697 mRNA_3329 0.42 +0.5

Or see this region's nucleotide sequence