Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3345

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11712 and 11713 are separated by 861 nucleotides11713 and 11714 are separated by 271 nucleotides mRNA_3344: 11712 - Hypothetical Protein, at 435,281 to 435,909 11712 mRNA_3345: 11713 - Hypothetical Protein, at 436,771 to 439,819 11713 mRNA_3346: 11714 - K19844 BEM2 GTPase-activating protein BEM2, at 440,091 to 443,147 11714

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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435,942 - +0.1
436,000 + +0.2
436,006 - +1.2
436,024 - +1.4
436,030 + +0.2
436,100 - +1.7
436,112 + +2.1
436,114 - +2.3
436,130 - +0.3
436,132 - +0.7
436,179 + +0.4
436,179 - -0.1
436,180 + -0.1
436,202 - +0.1
436,212 - +0.8
436,229 - +0.0
436,235 + +1.4
436,238 + -0.3
436,240 + -0.8
436,240 + -0.1
436,242 - +2.5
436,242 - +0.8
436,242 - -0.8
436,250 + -2.4
436,250 + +0.3
436,272 + +0.3
436,275 + +1.7
436,278 + -0.0
436,288 + -0.1
436,297 - -0.4
436,303 + +1.2
436,320 + +0.4
436,321 - -0.1
436,325 + +0.2
436,329 + +0.0
436,332 - +1.8
436,332 - +0.2
436,339 - +0.3
436,342 - +1.9
436,356 - +0.6
436,358 + +0.6
436,457 - +0.8
436,458 - +0.2
436,460 + +2.5
436,471 - -0.3
436,476 - +0.2
436,494 + +0.4
436,505 + +2.9
436,508 - +1.9
436,523 + +1.6
436,526 + +0.7
436,530 - -0.5
436,532 + +3.6
436,557 + -1.0
436,674 + +0.1
436,689 - +0.1
436,787 - +2.3
436,816 + -0.1
436,839 + +0.6
436,841 + +0.3
436,875 + +1.9
436,962 + +2.6
436,995 + -0.6
437,119 - 11713 mRNA_3345 0.11 +0.1
437,140 - 11713 mRNA_3345 0.12 +0.4
437,260 + 11713 mRNA_3345 0.16 +1.3
437,305 - 11713 mRNA_3345 0.18 -0.2
437,319 + 11713 mRNA_3345 0.18 -0.4
437,558 + 11713 mRNA_3345 0.26 -0.0
437,705 + 11713 mRNA_3345 0.31 +1.2
437,705 + 11713 mRNA_3345 0.31 -1.7
437,733 + 11713 mRNA_3345 0.32 -0.3
437,965 - 11713 mRNA_3345 0.39 +0.7
438,282 + 11713 mRNA_3345 0.50 +0.3
438,285 + 11713 mRNA_3345 0.50 +0.1
438,285 + 11713 mRNA_3345 0.50 +1.6
438,315 - 11713 mRNA_3345 0.51 -1.3
438,592 + 11713 mRNA_3345 0.60 +0.2
438,891 - 11713 mRNA_3345 0.70 -0.2
439,022 + 11713 mRNA_3345 0.74 -0.9
439,202 + 11713 mRNA_3345 0.80 +0.7
439,206 + 11713 mRNA_3345 0.80 +0.4
439,210 - 11713 mRNA_3345 0.80 +1.3
439,669 + +1.3
440,206 - -0.0
440,257 - +1.0
440,368 - +0.4
440,395 - +0.3
440,653 - 11714 mRNA_3346 0.18 -4.3
440,681 - 11714 mRNA_3346 0.19 -1.6

Or see this region's nucleotide sequence