Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3366

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11733 and 11734 overlap by 6 nucleotides11734 and 11735 are separated by 428 nucleotides mRNA_3365: 11733 - Hypothetical Protein, at 503,497 to 504,156 11733 mRNA_3366: 11734 - Hypothetical Protein, at 504,151 to 506,017 11734 mRNA_3367: 11735 - Hypothetical Protein, at 506,446 to 507,688 11735

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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503,345 - +0.3
503,353 + -1.2
503,356 - -0.8
503,363 + +0.1
503,363 + +0.2
503,368 + +0.7
503,368 - +0.9
503,377 - +1.1
503,378 - +2.5
503,418 - +0.9
503,717 + 11733 mRNA_3365 0.33 -0.8
503,865 + 11733 mRNA_3365 0.56 +1.4
503,954 - 11733 mRNA_3365 0.69 +1.4
504,072 + 11733 mRNA_3365 0.87 +0.2
504,210 + -0.3
504,395 + 11734 mRNA_3366 0.13 -0.3
504,488 - 11734 mRNA_3366 0.18 -0.1
504,492 + 11734 mRNA_3366 0.18 -0.1
504,573 + 11734 mRNA_3366 0.23 +1.7
504,660 - 11734 mRNA_3366 0.27 +0.0
504,942 - 11734 mRNA_3366 0.42 +1.7
505,332 - 11734 mRNA_3366 0.63 -0.2
505,688 + 11734 mRNA_3366 0.82 +0.1

Or see this region's nucleotide sequence