Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3419

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11787 and 11788 are separated by 390 nucleotides mRNA_3419: 11787 - K01120 cpdP 3',5'-cyclic-nucleotide phosphodiesterase, at 50,010 to 53,314 11787 mRNA_3420: 11788 - HMMPfam-ATP dependent DNA ligase domain-PF01068,HMMPfam-DNA ligase N terminus-PF04675,ProSiteProfiles-ATP-dependent DNA ligase family profile.-PS50160,SUPERFAMILY--SSF56091, at 53,705 to 57,912 11788

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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49,097 - -0.2
49,103 + -0.4
49,180 + +2.1
49,194 - -0.8
49,195 + -1.3
49,214 + +0.4
49,325 - +0.8
49,349 - -0.2
49,371 + +1.5
49,372 + -0.1
49,376 - +1.8
49,376 - +1.3
49,378 - +0.4
49,378 - -0.2
49,379 - +4.7
49,384 + +1.3
49,387 + -1.4
49,393 - +0.2
49,396 - +1.1
49,398 + -0.8
49,400 + +0.3
49,402 + -1.1
49,406 + +0.1
49,407 + -0.2
49,409 + +1.2
49,409 + +0.0
49,420 - +0.5
49,472 - +0.2
49,496 - +0.8
49,503 - -0.7
49,505 + +0.6
49,505 + -0.3
49,508 - +0.8
49,524 + +0.5
49,527 + +0.8
49,532 - +2.9
49,534 - +2.8
49,574 + -0.4
49,582 + +2.1
49,605 + +0.7
49,610 + +1.5
49,626 - -0.8
49,626 - +1.8
49,627 - +0.2
49,627 - -0.8
49,629 + -0.4
49,638 - +0.5
49,644 + +0.5
49,663 + -0.2
49,736 - -1.4
49,754 - -0.4
49,766 - -0.4
49,776 + +0.0
49,777 - +0.1
49,784 - -1.3
49,803 - +2.3
49,926 + +0.8
49,933 + +0.8
49,935 - -0.1
49,943 + +0.1
50,075 - +1.2
50,081 - +1.5
50,084 + +0.5
50,089 + -0.1
50,116 + -0.3
50,240 + +0.7
50,240 - +1.0
50,241 + +0.9
50,247 + +0.0
50,269 - +3.0
50,273 - -0.8
50,417 + 11787 mRNA_3419 0.12 -1.9
50,555 + 11787 mRNA_3419 0.16 +0.8
50,701 + 11787 mRNA_3419 0.21 +0.0
50,973 + 11787 mRNA_3419 0.29 +1.5
50,982 - 11787 mRNA_3419 0.29 +0.2
51,462 - 11787 mRNA_3419 0.44 -0.4
52,264 - 11787 mRNA_3419 0.68 -0.5
52,421 - 11787 mRNA_3419 0.73 +1.0
52,581 - 11787 mRNA_3419 0.78 -0.5
52,610 - 11787 mRNA_3419 0.79 +1.0
52,981 - 11787 mRNA_3419 0.90 -0.5
53,417 - +0.5
53,602 - +0.9
53,604 - -0.6
53,609 + -0.1
53,615 - +0.2
53,615 - -0.2
53,616 - +3.2
53,624 + +0.1

Or see this region's nucleotide sequence