Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3433

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11800 and 11801 are separated by 871 nucleotides11801 and 11802 are separated by 288 nucleotides mRNA_3432: 11800 - BLAST RecF/RecN/SMC protein [Sistotremastrum niveocremeum H..., at 86,676 to 87,359 11800 mRNA_3433: 11801 - HMMPfam-Rtr1/RPAP2 family-PF04181,HMMPfam-VMA21-like domain-PF09446,ProSiteProfiles-RTR1-type zinc finger.-PS51479, at 88,231 to 90,113 11801 mRNA_3434: 11802 - K00237 SDHD, SDH4 succinate dehydrogenase (ubiquinone) membrane anchor subunit, at 90,402 to 91,512 11802

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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87,271 + 11800 mRNA_3432 0.87 +0.8
87,335 + +0.1
87,389 - +0.2
87,422 + +0.3
87,422 - -0.4
87,425 + -1.0
87,443 - +0.9
87,447 + +1.9
87,447 + -0.0
87,488 - +1.6
87,514 - -0.4
87,526 + +0.2
87,537 - +0.4
87,549 + -0.6
87,564 - -1.0
87,566 - +0.3
87,693 + +0.3
87,765 + +0.7
87,781 - -0.1
87,853 - +2.3
87,858 - -2.4
87,871 - -0.6
87,872 + +0.1
87,909 - +0.5
88,004 + +0.9
88,016 + +0.8
88,020 + -0.3
88,070 + -0.1
88,115 + -0.1
88,120 - +0.9
88,279 - +0.8
88,290 + +2.0
88,574 + 11801 mRNA_3433 0.18 +1.4
88,583 - 11801 mRNA_3433 0.19 -1.0
88,592 + 11801 mRNA_3433 0.19 -1.5
88,593 - 11801 mRNA_3433 0.19 -0.2
88,600 + 11801 mRNA_3433 0.20 +0.1
88,614 + 11801 mRNA_3433 0.20 +0.7
88,707 - 11801 mRNA_3433 0.25 +1.6
88,709 - 11801 mRNA_3433 0.25 +2.1
88,725 + 11801 mRNA_3433 0.26 -0.4
88,749 + 11801 mRNA_3433 0.28 +1.1
88,783 - 11801 mRNA_3433 0.29 +0.3
88,854 - 11801 mRNA_3433 0.33 -0.1
88,855 + 11801 mRNA_3433 0.33 +1.3
88,873 + 11801 mRNA_3433 0.34 -0.5
88,916 - 11801 mRNA_3433 0.36 +0.4
89,111 - 11801 mRNA_3433 0.47 +0.2
89,136 - 11801 mRNA_3433 0.48 +1.1
89,140 + 11801 mRNA_3433 0.48 -1.1
89,148 - 11801 mRNA_3433 0.49 +1.5
89,149 + 11801 mRNA_3433 0.49 +0.9
89,157 - 11801 mRNA_3433 0.49 +2.3
89,273 - 11801 mRNA_3433 0.55 -0.3
89,296 + 11801 mRNA_3433 0.57 +0.2
89,428 - 11801 mRNA_3433 0.64 -0.6
89,571 - 11801 mRNA_3433 0.71 +0.9
90,299 + +1.9
90,330 - -0.1
90,332 + -1.4
90,335 - +0.5
90,337 - +0.1
90,441 - -1.0
90,454 + -1.4
90,456 - -1.4
90,460 - +1.1
90,484 + -1.0

Or see this region's nucleotide sequence