Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3438

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11805 and 11806 are separated by 146 nucleotides11806 and 11807 are separated by 698 nucleotides mRNA_3437: 11805 - K03033 PSMD3, RPN3 26S proteasome regulatory subunit N3, at 97,433 to 99,630 11805 mRNA_3438: 11806 - KOG1162 Predicted small molecule transporter, at 99,777 to 103,344 11806 mRNA_3439: 11807 - KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins, at 104,043 to 108,423 11807

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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99,393 + 11805 mRNA_3437 0.89 +0.4
99,712 - -0.0
99,851 + +0.1
100,033 - -1.9
100,201 + 11806 mRNA_3438 0.12 -0.2
100,203 - 11806 mRNA_3438 0.12 +1.5
100,897 + 11806 mRNA_3438 0.31 +1.0
100,927 + 11806 mRNA_3438 0.32 +2.7
101,106 - 11806 mRNA_3438 0.37 +1.1
101,175 + 11806 mRNA_3438 0.39 +1.7
101,187 + 11806 mRNA_3438 0.40 -1.0
101,460 - 11806 mRNA_3438 0.47 -1.2
101,580 + 11806 mRNA_3438 0.51 +2.7
101,765 + 11806 mRNA_3438 0.56 -0.4
101,911 - 11806 mRNA_3438 0.60 +0.3
101,952 - 11806 mRNA_3438 0.61 +1.7
102,212 - 11806 mRNA_3438 0.68 +0.6
102,227 + 11806 mRNA_3438 0.69 +0.2
102,381 + 11806 mRNA_3438 0.73 +0.6
102,382 - 11806 mRNA_3438 0.73 -0.4
102,396 - 11806 mRNA_3438 0.73 +0.6
102,943 - 11806 mRNA_3438 0.89 +0.8
103,102 + +1.3
103,379 + +0.9
103,397 + +0.7
103,670 - +0.6
103,695 + +0.1
103,777 + -0.5
103,806 - -0.9
103,969 - -1.9
104,231 + +0.6

Or see this region's nucleotide sequence