Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3451

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11818 and 11819 are separated by 622 nucleotides11819 and 11820 are separated by 85 nucleotides mRNA_3450: 11818 - K20131 RABGEF1 Rab5 GDP/GTP exchange factor, at 129,414 to 132,360 11818 mRNA_3451: 11819 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 132,983 to 136,040 11819 mRNA_3452: 11820 - HMMPfam-Protein of unknown function (DUF2454)-PF10521,SUPERFAMILY--SSF48371, at 136,126 to 138,036 11820

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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132,130 + +0.4
132,275 - +0.5
132,304 + +0.2
132,411 + -0.4
132,434 + -2.0
132,571 - +1.1
132,571 - -0.4
132,578 + -0.4
132,587 - -0.1
132,712 - -0.2
132,735 - +0.0
132,869 - +1.2
132,874 + +1.5
132,879 + +0.6
132,889 - +0.1
133,039 + +0.2
133,041 + +1.7
133,042 - -0.0
133,444 - 11819 mRNA_3451 0.15 -0.0
133,483 - 11819 mRNA_3451 0.16 +2.1
133,484 - 11819 mRNA_3451 0.16 +1.2
133,502 + 11819 mRNA_3451 0.17 +0.9
133,633 + 11819 mRNA_3451 0.21 +2.4
133,654 - 11819 mRNA_3451 0.22 +0.6
134,070 - 11819 mRNA_3451 0.36 -0.1
134,169 + 11819 mRNA_3451 0.39 -1.3
134,226 - 11819 mRNA_3451 0.41 -1.2
134,230 - 11819 mRNA_3451 0.41 -0.2
134,653 + 11819 mRNA_3451 0.55 +0.2
134,666 - 11819 mRNA_3451 0.55 +0.6
135,825 - +0.4
135,858 + +1.6
135,962 - -1.4

Or see this region's nucleotide sequence