Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3467

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11835 and 11836 are separated by 541 nucleotides mRNA_3467: 11835 - KOG4503 Uncharacterized conserved membrane protein, at 173,556 to 174,836 11835 mRNA_3468: 11836 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 175,378 to 177,362 11836

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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173,294 - -2.4
173,425 - +0.1
173,428 + +1.8
173,430 + +0.7
173,430 + +2.3
173,431 + -0.1
173,431 - +2.7
173,438 - -1.8
173,446 - -0.3
173,451 + +1.4
173,452 + -0.0
173,460 + -0.1
175,070 + -0.8
175,257 + +0.6
175,386 + +0.1
175,400 - +0.7
175,432 + -0.8
175,567 - +0.1
175,714 + 11836 mRNA_3468 0.17 +1.8
175,719 - 11836 mRNA_3468 0.17 +1.3

Or see this region's nucleotide sequence