Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3480

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11847 and 11848 are separated by 196 nucleotides11848 and 11849 are separated by 214 nucleotides mRNA_3479: 11847 - SUPERFAMILY--SSF46934, at 206,991 to 209,346 11847 mRNA_3480: 11848 - K02180 BUB3 cell cycle arrest protein BUB3, at 209,543 to 211,018 11848 mRNA_3481: 11849 - K01752 E4.3.1.17, sdaA, sdaB, tdcG L-serine dehydratase, at 211,233 to 213,567 11849

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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208,552 + 11847 mRNA_3479 0.66 +0.3
208,934 + 11847 mRNA_3479 0.82 +0.9
209,085 + 11847 mRNA_3479 0.89 -0.5
209,370 + -1.3
209,374 + -0.2
209,495 + -0.9
209,524 + -0.7
211,104 - -1.4
211,112 - -1.2
211,358 + +1.6
211,574 + 11849 mRNA_3481 0.15 +0.3
211,802 - 11849 mRNA_3481 0.24 +0.4
211,811 - 11849 mRNA_3481 0.25 +1.3
211,835 + 11849 mRNA_3481 0.26 +0.4
211,841 + 11849 mRNA_3481 0.26 -0.2
211,863 + 11849 mRNA_3481 0.27 -0.5
211,881 + 11849 mRNA_3481 0.28 +0.0

Or see this region's nucleotide sequence