Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3500

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11867 and 11868 are separated by 703 nucleotides11868 and 11869 are separated by 405 nucleotides mRNA_3499: 11867 - K00231 PPOX, hemY oxygen-dependent protoporphyrinogen oxidase, at 243,095 to 244,996 11867 mRNA_3500: 11868 - KOG2519 5'-3' exonuclease, at 245,700 to 248,074 11868 mRNA_3501: 11869 - KOG3791 Predicted RNA-binding protein involved in translational regulation, at 248,480 to 250,835 11869

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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245,132 - +0.3
245,138 - -0.4
245,138 - +0.7
245,220 - -0.6
245,228 + -0.9
245,235 - +0.3
245,241 + +1.5
245,248 - +0.5
245,258 + -1.2
247,785 + 11868 mRNA_3500 0.88 +0.3
247,880 - -0.3
248,273 - -1.1
248,491 - +0.1
248,520 - -0.6
248,614 - +0.0
248,710 - +0.1
248,923 - 11869 mRNA_3501 0.19 +2.5

Or see this region's nucleotide sequence