Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3510

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11877 and 11878 are separated by 372 nucleotides mRNA_3509: 11877 - K01464 DPYS, dht, hydA dihydropyrimidinase, at 263,913 to 265,913 11877 mRNA_3510: 11878 - K00889 PIP5K 1-phosphatidylinositol-4-phosphate 5-kinase, at 266,286 to 268,239 11878

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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265,295 + 11877 mRNA_3509 0.69 +0.5
265,759 - +0.5
265,765 + -1.7
266,058 + -0.8
266,126 - +3.1
266,231 - +2.0
269,115 - -1.4

Or see this region's nucleotide sequence