Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3512

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11879 and 11880 are separated by 43 nucleotides mRNA_3511: 11879 - K10875 RAD54L, RAD54 DNA repair and recombination protein RAD54 and RAD54-like protein, at 270,571 to 274,030 11879 mRNA_3512: 11880 - K10873 RAD52 DNA repair and recombination protein RAD52, at 274,074 to 276,108 11880

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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273,945 + -1.1
274,402 + 11880 mRNA_3512 0.16 -1.6
274,438 + 11880 mRNA_3512 0.18 +3.0
274,546 - 11880 mRNA_3512 0.23 -0.1
274,660 + 11880 mRNA_3512 0.29 +0.9
274,660 - 11880 mRNA_3512 0.29 +0.6
274,697 + 11880 mRNA_3512 0.31 -0.4
274,699 - 11880 mRNA_3512 0.31 +0.1
274,706 - 11880 mRNA_3512 0.31 +0.4
274,827 - 11880 mRNA_3512 0.37 +1.5
274,827 - 11880 mRNA_3512 0.37 +0.8
274,854 + 11880 mRNA_3512 0.38 +1.1
275,724 - 11880 mRNA_3512 0.81 +0.6
276,000 - +1.2
276,456 + -0.2
276,521 - -0.2
276,585 - -0.8
276,609 + +2.7
276,862 - +0.5

Or see this region's nucleotide sequence