Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3513

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11881 and 11882 are separated by 210 nucleotides mRNA_3513: 11881 - K11718 HUGT UDP-glucose-glycoprotein glucosyltransferase, at 277,755 to 283,906 11881 mRNA_3514: 11882 - K18097 GCY1 glycerol 2-dehydrogenase (NADP+), at 284,117 to 285,391 11882

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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276,862 - +0.5
277,254 + +0.3
277,369 - +0.5
277,390 + +1.8
277,545 - +1.5
277,684 - +1.0
277,685 + +0.2
277,689 - +1.4
277,692 + +1.0
277,692 + +0.6
277,717 + -0.3
277,834 - -0.6
277,855 + -0.6
277,855 + +1.0
277,976 - -0.8
277,977 + +0.4
278,000 + +0.2
278,001 - -0.1
278,119 + +0.3
278,314 + -0.9
278,419 - 11881 mRNA_3513 0.11 -0.1
278,482 - 11881 mRNA_3513 0.12 -0.6
278,996 - 11881 mRNA_3513 0.20 +0.7
279,024 - 11881 mRNA_3513 0.21 +0.4
279,392 + 11881 mRNA_3513 0.27 +1.5
279,605 - 11881 mRNA_3513 0.30 -0.0
279,781 - 11881 mRNA_3513 0.33 -1.0
280,025 - 11881 mRNA_3513 0.37 -1.3
280,355 - 11881 mRNA_3513 0.42 +0.2
280,655 - 11881 mRNA_3513 0.47 +0.2
280,916 - 11881 mRNA_3513 0.51 -0.1
281,381 + 11881 mRNA_3513 0.59 +1.3
281,517 - 11881 mRNA_3513 0.61 -0.5
281,762 - 11881 mRNA_3513 0.65 -0.9
281,802 - 11881 mRNA_3513 0.66 +0.4
282,022 + 11881 mRNA_3513 0.69 +0.9
282,245 - 11881 mRNA_3513 0.73 +2.7
282,431 - 11881 mRNA_3513 0.76 -1.5
282,672 - 11881 mRNA_3513 0.80 +2.6
282,905 + 11881 mRNA_3513 0.84 +2.4
282,941 - 11881 mRNA_3513 0.84 +0.1
283,960 + +0.7
283,975 - -0.7
283,992 + -0.4
284,009 - +2.2
284,026 + -1.4
284,148 + -1.3
284,150 - +2.1
284,180 - +0.4
284,190 + -0.3
284,192 - -0.5
284,225 + +1.6
284,313 + 11882 mRNA_3514 0.15 -1.4
284,406 + 11882 mRNA_3514 0.23 -0.1
284,442 - 11882 mRNA_3514 0.25 -2.3
284,541 - 11882 mRNA_3514 0.33 +2.8
284,564 - 11882 mRNA_3514 0.35 -0.2
284,567 + 11882 mRNA_3514 0.35 +1.5
284,579 - 11882 mRNA_3514 0.36 +0.8
284,580 + 11882 mRNA_3514 0.36 +0.9
284,598 + 11882 mRNA_3514 0.38 -0.2
284,718 - 11882 mRNA_3514 0.47 -0.9

Or see this region's nucleotide sequence