Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3520

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11887 and 11888 are separated by 275 nucleotides mRNA_3519: 11887 - KOG4686 Predicted sugar transporter, at 297,438 to 299,524 11887 mRNA_3520: 11888 - BLAST mannose-6-phosphate isomerase, class I [Kwoniella..., at 299,800 to 300,733 11888

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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299,309 - 11887 mRNA_3519 0.90 +0.6
299,415 - +0.9
300,587 - 11888 mRNA_3520 0.84 +0.7
300,608 - 11888 mRNA_3520 0.87 -0.2
300,744 + +0.4
300,900 - +0.4
301,047 + +4.3
301,049 - +1.3
301,058 + +0.2
301,385 + -1.6
301,499 - -0.3

Or see this region's nucleotide sequence