Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3556

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11923 and 11924 are separated by 131 nucleotides11924 and 11925 are separated by 628 nucleotides mRNA_3555: 11923 - Hypothetical Protein, at 37,536 to 38,312 11923 mRNA_3556: 11924 - KOG0254 Predicted transporter (major facilitator superfamily), at 38,444 to 40,817 11924 mRNA_3557: 11925 - K01634 SGPL1, DPL1 sphinganine-1-phosphate aldolase, at 41,446 to 43,898 11925

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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37,505 + -0.9
37,550 - +0.4
37,558 - +0.4
37,568 - +0.3
37,569 + -1.7
37,571 + +0.0
37,609 + -0.8
37,610 - +0.0
37,630 - 11923 mRNA_3555 0.12 +0.2
37,630 + 11923 mRNA_3555 0.12 +0.5
37,632 + 11923 mRNA_3555 0.12 +1.5
37,636 + 11923 mRNA_3555 0.13 +1.0
37,646 + 11923 mRNA_3555 0.14 +1.3
37,650 - 11923 mRNA_3555 0.15 -0.9
37,684 - 11923 mRNA_3555 0.19 +0.9
37,746 + 11923 mRNA_3555 0.27 +0.0
37,753 + 11923 mRNA_3555 0.28 -0.7
37,760 + 11923 mRNA_3555 0.29 +1.5
37,763 + 11923 mRNA_3555 0.29 +0.6
37,812 - 11923 mRNA_3555 0.36 +1.8
37,822 - 11923 mRNA_3555 0.37 +1.9
37,833 + 11923 mRNA_3555 0.38 +0.7
37,833 - 11923 mRNA_3555 0.38 -2.1
37,835 + 11923 mRNA_3555 0.38 +2.4
37,844 - 11923 mRNA_3555 0.40 -0.7
37,848 - 11923 mRNA_3555 0.40 -2.3
37,861 + 11923 mRNA_3555 0.42 +2.3
37,865 - 11923 mRNA_3555 0.42 -1.3
37,867 + 11923 mRNA_3555 0.43 +0.7
37,870 + 11923 mRNA_3555 0.43 +0.9
37,871 + 11923 mRNA_3555 0.43 -1.5
37,877 + 11923 mRNA_3555 0.44 +2.3
37,885 - 11923 mRNA_3555 0.45 +2.2
37,920 + 11923 mRNA_3555 0.49 -0.6
37,920 + 11923 mRNA_3555 0.49 +1.5
37,924 + 11923 mRNA_3555 0.50 +0.3
37,931 + 11923 mRNA_3555 0.51 +1.0
37,979 + 11923 mRNA_3555 0.57 +1.5
37,984 + 11923 mRNA_3555 0.58 +1.5
37,994 + 11923 mRNA_3555 0.59 +0.4
38,032 + 11923 mRNA_3555 0.64 -0.0
38,081 - 11923 mRNA_3555 0.70 -0.6
38,081 - 11923 mRNA_3555 0.70 +2.3
38,084 - 11923 mRNA_3555 0.71 +0.2
38,086 + 11923 mRNA_3555 0.71 -0.3
38,090 + 11923 mRNA_3555 0.71 -1.0
38,115 + 11923 mRNA_3555 0.75 +1.5
38,128 + 11923 mRNA_3555 0.76 +0.8
38,163 - 11923 mRNA_3555 0.81 -1.9
38,183 + 11923 mRNA_3555 0.83 -1.3
38,193 + 11923 mRNA_3555 0.85 +0.0
38,234 + 11923 mRNA_3555 0.90 +1.2
38,253 - -0.9
38,254 - +0.4
38,256 - -0.6
38,257 + +0.7
38,258 - -0.1
38,258 - +0.2
38,269 + +0.0
38,272 + +0.9
38,275 + -0.5
38,285 + +0.9
38,411 + -0.0
38,421 - -1.4
38,431 - +0.9
38,476 + -0.3
38,548 + +0.5
38,580 + +0.6
38,612 + +1.9
38,706 - 11924 mRNA_3556 0.11 +0.1
38,767 + 11924 mRNA_3556 0.14 +0.7
38,904 + 11924 mRNA_3556 0.19 +1.6
39,199 - 11924 mRNA_3556 0.32 +0.5
39,206 + 11924 mRNA_3556 0.32 +1.1
39,447 - 11924 mRNA_3556 0.42 -0.1
39,471 - 11924 mRNA_3556 0.43 +0.8
39,481 + 11924 mRNA_3556 0.44 +0.3
39,517 + 11924 mRNA_3556 0.45 +0.6
39,760 + 11924 mRNA_3556 0.55 +0.2
39,781 - 11924 mRNA_3556 0.56 -1.0
39,865 - 11924 mRNA_3556 0.60 +1.5
40,205 - 11924 mRNA_3556 0.74 +0.4
40,298 + 11924 mRNA_3556 0.78 +0.5
40,353 + 11924 mRNA_3556 0.80 -0.7
40,357 + 11924 mRNA_3556 0.81 -0.5
40,402 - 11924 mRNA_3556 0.82 -0.9
40,937 + -2.0
40,974 + -0.2
41,079 - -0.5
41,080 - +0.2
41,082 - +0.4
41,084 + -1.1
41,224 + +1.9
41,226 - +0.8
41,227 + +1.2
41,234 + +1.6
41,242 + +0.3
41,261 - +1.3
41,369 - +0.5
41,371 - +0.6
41,391 - +2.2
41,396 + -0.2
41,405 + +1.4
41,564 - +0.5
41,678 - -1.3
41,692 - 11925 mRNA_3557 0.10 -0.1
41,692 + 11925 mRNA_3557 0.10 +0.4

Or see this region's nucleotide sequence