Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3572

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11939 and 11940 are separated by 479 nucleotides11940 and 11941 overlap by 4 nucleotides mRNA_3571: 11939 - K03681 RRP40, EXOSC3 exosome complex component RRP40, at 77,591 to 78,625 11939 mRNA_3572: 11940 - K11314 TADA2A, ADA2 transcriptional adapter 2-alpha, at 79,105 to 81,061 11940 mRNA_3573: 11941 - SUPERFAMILY--SSF54928, at 81,058 to 83,632 11941

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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78,743 - +0.7
78,753 + +0.5
78,756 + -0.0
78,889 + -0.9
78,894 + +0.8
80,640 - 11940 mRNA_3572 0.78 -1.5
80,686 + 11940 mRNA_3572 0.81 +0.7
80,991 - +1.5
81,273 + +0.3
81,381 + 11941 mRNA_3573 0.13 +0.8
81,411 + 11941 mRNA_3573 0.14 -0.8
81,630 - 11941 mRNA_3573 0.22 +0.3
81,637 + 11941 mRNA_3573 0.22 +1.1
81,702 - 11941 mRNA_3573 0.25 +0.2
81,937 + 11941 mRNA_3573 0.34 +0.4

Or see this region's nucleotide sequence