Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3592

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11959 and 11960 are separated by 406 nucleotides11960 and 11961 are separated by 144 nucleotides mRNA_3591: 11959 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 120,588 to 122,766 11959 mRNA_3592: 11960 - KOG2664 Small nuclear RNA activating protein complex - 50kD subunit (SNAP50), at 123,173 to 125,228 11960 mRNA_3593: 11961 - K06978 K06978 uncharacterized protein, at 125,373 to 127,423 11961

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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122,350 + 11959 mRNA_3591 0.81 +0.4
122,370 + 11959 mRNA_3591 0.82 +0.8
122,650 - +0.1
122,657 + -0.2
122,703 - -0.0
122,815 - +1.0
122,815 - +1.5
123,089 + +0.7
125,281 + -1.9
125,288 + -0.4
125,453 + -0.2
125,701 - 11961 mRNA_3593 0.16 +0.9
125,915 + 11961 mRNA_3593 0.26 -0.6
126,145 + 11961 mRNA_3593 0.38 +1.3

Or see this region's nucleotide sequence