Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3598

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11966 and 11967 are separated by 217 nucleotides mRNA_3598: 11966 - KOG2652 RNA polymerase II transcription initiation factor TFIIA, large chain, at 137,259 to 138,295 11966 mRNA_3599: 11967 - K02134 ATPeF1D, ATP5D, ATP16 F-type H+-transporting ATPase subunit delta, at 138,513 to 139,861 11967

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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136,339 - -0.5
136,776 - +0.4
136,802 - +0.0
136,938 - +2.0
137,107 + +1.0
138,385 - +0.1
138,388 + -0.3
138,415 + +0.5
138,441 - +1.4
138,445 + +0.7
138,446 + +1.2
138,449 + -1.0
138,450 - +1.8
138,451 + +0.0
138,454 - +0.3
138,457 - -1.2
138,465 - -0.5
138,465 + +0.3
138,471 + -0.2
138,473 + +0.3
138,476 + -0.4
138,477 + +0.3

Or see this region's nucleotide sequence