Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3622

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11989 and 11990 are separated by 534 nucleotides mRNA_3621: 11989 - K00252 GCDH, gcdH glutaryl-CoA dehydrogenase, at 183,204 to 185,483 11989 mRNA_3622: 11990 - KOG0254 Predicted transporter (major facilitator superfamily), at 186,018 to 188,381 11990

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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185,231 - 11989 mRNA_3621 0.89 +0.4
185,249 + 11989 mRNA_3621 0.90 +2.3
185,400 + -1.3
185,410 + -2.6
185,523 - +1.3
185,533 - -0.8
185,533 - +0.5
185,548 - -0.8
185,548 - -0.2
185,549 - -0.7
185,553 + +0.8
185,560 + -0.7
185,564 + +0.3
185,565 - -0.7
185,567 - +2.2
185,568 + -0.5
185,570 - +0.9
185,578 + +2.3
185,578 + +0.7
185,593 - -0.6
185,593 - -0.4
185,593 - +0.3
185,594 + -0.6
185,596 + -1.1
185,601 + -1.8
185,649 - +1.7
185,661 - -0.0
185,661 - +1.1
185,662 + +0.2
185,662 + -0.1
185,666 + +0.5
185,673 - -0.2
185,677 - +0.0
185,679 + -0.9
185,696 + +0.2
185,704 + +0.2
185,712 - +0.2
185,713 + +0.8
185,727 + +1.8
185,744 - +1.1
185,763 + +1.8
185,786 - +0.1
185,816 + -0.9
185,830 + +1.7
185,833 - +1.9
185,852 - +0.7
185,855 + +0.3
185,877 + +2.7
185,885 + +0.2
185,888 + +1.2
185,888 + +0.4
185,912 - +2.1
185,920 + +0.6
185,948 + +1.3
185,963 - +1.2
185,978 - +1.8
185,979 + +2.2
185,989 + +0.4
186,026 + -1.3
186,029 + -1.1
186,122 + -0.9
186,164 - -0.3
186,196 + -0.7
186,301 - 11990 mRNA_3622 0.12 -0.4
186,328 - 11990 mRNA_3622 0.13 -0.6
186,349 - 11990 mRNA_3622 0.14 +2.4
186,378 - 11990 mRNA_3622 0.15 +4.3
186,538 + 11990 mRNA_3622 0.22 +0.1
186,540 + 11990 mRNA_3622 0.22 +0.4
186,573 - 11990 mRNA_3622 0.23 -0.4
186,579 - 11990 mRNA_3622 0.24 -0.4
186,599 + 11990 mRNA_3622 0.25 +0.7
186,622 - 11990 mRNA_3622 0.26 +1.0
186,645 - 11990 mRNA_3622 0.27 -0.3
186,776 + 11990 mRNA_3622 0.32 +0.3
186,789 + 11990 mRNA_3622 0.33 +1.3
186,809 - 11990 mRNA_3622 0.33 -0.4
186,843 + 11990 mRNA_3622 0.35 +0.9
186,861 + 11990 mRNA_3622 0.36 +0.3
186,967 + 11990 mRNA_3622 0.40 -1.3
187,087 + 11990 mRNA_3622 0.45 -0.1
187,242 + 11990 mRNA_3622 0.52 -2.0
187,254 + 11990 mRNA_3622 0.52 +1.2
187,358 + 11990 mRNA_3622 0.57 -0.1
187,371 + 11990 mRNA_3622 0.57 +1.0
187,614 - 11990 mRNA_3622 0.68 +1.9
187,650 + 11990 mRNA_3622 0.69 +0.9
187,773 + 11990 mRNA_3622 0.74 -1.2
187,802 - 11990 mRNA_3622 0.75 +0.4
187,806 - 11990 mRNA_3622 0.76 +0.7
187,845 + 11990 mRNA_3622 0.77 -0.8
187,908 - 11990 mRNA_3622 0.80 -0.4
187,911 + 11990 mRNA_3622 0.80 -1.2
188,228 - +0.1
188,425 + -0.4
188,463 + +1.4
188,486 - +0.2
188,500 + +1.6
188,508 - +0.2
188,523 + -0.5
188,546 + +0.4
188,548 + +0.7
188,549 - +0.2
188,552 + +2.7
188,553 + -1.5
188,556 - -0.2
188,557 + +1.4
188,559 - -3.2
188,570 - +0.2
188,570 - -1.9
188,572 + +0.3
188,576 - +0.8
188,591 + -0.5
188,592 - +0.2
188,593 + +0.5
188,605 + +0.1
188,612 + +0.1
188,704 - +1.2
188,705 - -0.7
188,708 - +0.2
188,709 + +0.0
188,717 + +0.2
188,718 - -0.5
188,721 + +1.1
188,721 + -0.7
188,724 - -0.4
188,725 - -1.7
188,725 - +0.1
188,730 - +1.1
188,731 + -1.8
188,732 + -2.6
188,738 + -1.1
188,749 - -0.5
188,753 + +0.6
188,782 - -0.1
188,782 - +2.9
188,784 - +0.8
188,786 + +0.3
188,791 - +0.2
188,791 + +0.2
188,803 - +2.7
188,805 - +1.5
188,809 - -2.1
188,814 - +4.3
188,815 - +0.4
188,815 - -1.5
188,816 - +0.3
188,816 - -0.3
188,816 + +1.2
188,824 + -0.9
188,831 - -0.2
188,833 + +0.8
188,836 + +2.5
188,837 - +2.2
188,841 + +1.3
188,841 - +0.5
188,844 + +0.8
188,846 + +1.3
188,862 - +0.5
188,864 + +2.2
188,872 + +0.5
188,875 - -0.6
188,876 + -0.9
188,878 + -0.7
188,887 - +1.3
188,896 - +1.2
188,896 - -0.3
188,897 - +0.3
188,903 + +0.3
188,903 + +1.3
188,906 + -1.8
188,907 + +0.1
188,908 - +0.3
188,914 + -0.5
188,921 - -1.6
188,922 - -0.3
188,934 - +0.4
188,936 - +3.2
188,936 - +0.7
188,942 - +1.4
188,943 - +1.2
188,951 - +0.4
188,962 - +1.0
189,019 + +0.6
189,075 - +2.4
189,080 - +0.4
189,082 - -0.7
189,082 + +1.0
189,100 - -0.1
189,102 + +0.6
189,106 - +0.1
189,119 + +2.2
189,119 + +1.8
189,119 - -0.1
189,124 - -1.7
189,125 + -0.2
189,125 + +0.5
189,127 + +1.0
189,132 + -1.2
189,134 + -0.3
189,158 - +0.9
189,171 + -0.6
189,171 - -0.2
189,184 - -0.0
189,186 - -0.3
189,186 - -0.3
189,187 + +1.0
189,189 + +2.1
189,190 + -0.3
189,221 + +1.7
189,222 - +0.2
189,223 + +1.1
189,232 + +1.1
189,252 - +2.1
189,260 - +0.6
189,272 - -2.0
189,292 - +0.8
189,296 - +1.2
189,304 - -0.2
189,371 + +0.4

Or see this region's nucleotide sequence