Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3628

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11995 and 11996 are separated by 393 nucleotides11996 and 11997 are separated by 84 nucleotides mRNA_3627: 11995 - SUPERFAMILY--SSF51110,SUPERFAMILY--SSF51126, at 199,548 to 202,220 11995 mRNA_3628: 11996 - K10849 ERCC1 DNA excision repair protein ERCC-1, at 202,614 to 203,898 11996 mRNA_3629: 11997 - Hypothetical Protein, at 203,983 to 204,971 11997

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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201,792 - 11995 mRNA_3627 0.84 +0.4
201,941 - 11995 mRNA_3627 0.90 +0.4
201,976 - -0.4
201,976 + +0.9
202,114 - -0.6
202,243 + +1.4
202,370 + +0.9
202,374 + +1.0
202,391 - +0.3
202,395 + -0.4
202,401 + +0.0
202,409 - -1.3
202,529 - -0.3
202,539 + +0.4
202,545 - +0.0
202,548 - +1.2
202,555 - -0.4
202,557 + -1.4
202,564 - +0.4
202,613 - +0.4
202,685 - +0.3
202,687 - +1.0
202,701 + -0.9
202,747 - 11996 mRNA_3628 0.10 +1.7
202,786 + 11996 mRNA_3628 0.13 -0.8
202,855 + 11996 mRNA_3628 0.19 +1.0
202,967 + 11996 mRNA_3628 0.27 -0.3
202,998 + 11996 mRNA_3628 0.30 +0.8
203,138 - 11996 mRNA_3628 0.41 +0.4
203,147 - 11996 mRNA_3628 0.41 -0.8
203,267 + 11996 mRNA_3628 0.51 +2.3
203,724 - 11996 mRNA_3628 0.86 -1.1
203,731 - 11996 mRNA_3628 0.87 +0.8
203,861 + -0.9
204,192 + 11997 mRNA_3629 0.21 +1.0
204,585 - 11997 mRNA_3629 0.61 +0.6
204,704 - 11997 mRNA_3629 0.73 +3.4

Or see this region's nucleotide sequence