Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3654

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12022 and 12023 are separated by 217 nucleotides mRNA_3654: 12022 - K11204 GCLC glutamate--cysteine ligase catalytic subunit, at 269,358 to 271,210 12022 mRNA_3655: 12023 - KOG1721 FOG Zn-finger, at 271,428 to 272,912 12023

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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268,770 + +2.1
268,811 - +0.8
268,817 - -0.1
268,818 - +2.7
268,821 - -1.2
268,912 - -1.6
268,984 + +0.8
268,989 + -0.9
269,009 + +0.6
269,032 - +0.1
269,089 - +0.1
269,138 - +1.3
269,151 - -0.9
269,174 + +0.7
269,189 - +0.4
269,228 - -0.1
269,232 + -0.3
269,256 - +1.4
269,312 + +2.2
269,330 - -0.2
269,339 - +0.5
269,343 + +0.7
269,353 + +0.7
269,354 - -0.1
269,355 + +0.4
269,357 + +0.5
269,358 + +1.7
269,358 + +0.4
269,375 + +0.4
269,377 + +0.5
269,397 + -1.4
269,397 - +0.2
269,464 - +0.7
269,477 - +0.5
269,479 - +0.1
269,479 - -0.1
269,481 - -0.2
269,482 - +1.5
269,502 + -0.2
269,518 - +2.5
269,641 + 12022 mRNA_3654 0.15 -2.1
269,650 - 12022 mRNA_3654 0.16 +0.4
269,752 - 12022 mRNA_3654 0.21 -1.2
269,793 - 12022 mRNA_3654 0.23 -0.9
269,899 - 12022 mRNA_3654 0.29 -1.6
269,900 - 12022 mRNA_3654 0.29 +1.5
269,921 - 12022 mRNA_3654 0.30 +0.7
269,930 - 12022 mRNA_3654 0.31 +1.0
269,934 - 12022 mRNA_3654 0.31 +0.0
269,935 + 12022 mRNA_3654 0.31 +1.5
269,935 + 12022 mRNA_3654 0.31 +3.4
269,941 - 12022 mRNA_3654 0.31 +0.5
269,950 - 12022 mRNA_3654 0.32 -0.3
269,974 - 12022 mRNA_3654 0.33 -0.5
269,975 - 12022 mRNA_3654 0.33 -0.2
269,976 + 12022 mRNA_3654 0.33 -0.4
269,976 + 12022 mRNA_3654 0.33 +3.1
269,978 - 12022 mRNA_3654 0.33 +0.5
269,990 - 12022 mRNA_3654 0.34 +0.3
270,017 + 12022 mRNA_3654 0.36 +0.1
270,019 + 12022 mRNA_3654 0.36 +1.1
270,027 - 12022 mRNA_3654 0.36 -0.8
270,028 + 12022 mRNA_3654 0.36 -2.6
270,053 + 12022 mRNA_3654 0.38 +0.6
270,053 + 12022 mRNA_3654 0.38 -0.5
270,054 - 12022 mRNA_3654 0.38 +2.4
270,062 + 12022 mRNA_3654 0.38 -1.1
270,090 + 12022 mRNA_3654 0.40 +0.3
270,192 - 12022 mRNA_3654 0.45 +0.7
270,278 - 12022 mRNA_3654 0.50 +0.4
270,314 + 12022 mRNA_3654 0.52 +1.9
270,350 - 12022 mRNA_3654 0.54 -2.5
270,407 - 12022 mRNA_3654 0.57 +0.2
270,444 - 12022 mRNA_3654 0.59 -1.7
270,485 - 12022 mRNA_3654 0.61 -1.0
270,486 + 12022 mRNA_3654 0.61 +1.3
270,492 + 12022 mRNA_3654 0.61 +0.1
270,497 - 12022 mRNA_3654 0.61 -1.8
270,523 - 12022 mRNA_3654 0.63 -1.5
270,626 - 12022 mRNA_3654 0.68 -1.6
270,646 + 12022 mRNA_3654 0.70 -0.0
270,650 + 12022 mRNA_3654 0.70 -0.3
270,655 + 12022 mRNA_3654 0.70 +2.0
270,811 + 12022 mRNA_3654 0.78 +0.0
270,911 - 12022 mRNA_3654 0.84 +0.1
270,934 - 12022 mRNA_3654 0.85 +0.2
271,076 - -2.2
271,104 - -1.2
271,116 + -0.9
271,177 - -0.3
271,177 - +1.0
271,248 - +0.6
271,249 + +1.3
271,252 - -1.6
271,254 + +0.2
271,270 + -0.9
271,379 - +0.3
271,405 - +1.3
271,428 + -1.6
271,459 - -2.0
271,552 + +0.9
271,711 + 12023 mRNA_3655 0.19 -0.6
271,836 - 12023 mRNA_3655 0.27 +0.4
271,837 + 12023 mRNA_3655 0.28 +0.8
272,009 - 12023 mRNA_3655 0.39 -0.3

Or see this region's nucleotide sequence