Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3658

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12026 and 12027 are separated by 379 nucleotides mRNA_3658: 12026 - Hypothetical Protein, at 282,241 to 283,121 12026 mRNA_3659: 12027 - Hypothetical Protein, at 283,501 to 284,501 12027

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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282,121 + -1.1
282,124 + +0.3
282,142 + -0.0
282,149 + -2.5
282,275 - +1.1
282,368 + 12026 mRNA_3658 0.14 +0.2
282,396 - 12026 mRNA_3658 0.18 +2.2
282,423 + 12026 mRNA_3658 0.21 +0.3
282,430 + 12026 mRNA_3658 0.21 +0.9
282,448 - 12026 mRNA_3658 0.23 +1.3
282,497 - 12026 mRNA_3658 0.29 -1.4
282,535 - 12026 mRNA_3658 0.33 +0.9
282,550 + 12026 mRNA_3658 0.35 -0.6
282,562 - 12026 mRNA_3658 0.36 -1.4
282,571 - 12026 mRNA_3658 0.37 +0.1
282,572 + 12026 mRNA_3658 0.38 -0.0
282,581 - 12026 mRNA_3658 0.39 +0.4
282,582 - 12026 mRNA_3658 0.39 +1.8
282,587 - 12026 mRNA_3658 0.39 +0.1
282,590 - 12026 mRNA_3658 0.40 -1.9
282,593 - 12026 mRNA_3658 0.40 -0.6
282,593 + 12026 mRNA_3658 0.40 -2.5
282,594 - 12026 mRNA_3658 0.40 -0.3
282,596 + 12026 mRNA_3658 0.40 +0.3
282,601 - 12026 mRNA_3658 0.41 +0.1
282,612 + 12026 mRNA_3658 0.42 -1.4
282,640 + 12026 mRNA_3658 0.45 +1.9
282,647 - 12026 mRNA_3658 0.46 -0.5
282,690 - 12026 mRNA_3658 0.51 +2.6
282,746 - 12026 mRNA_3658 0.57 +0.5
282,760 - 12026 mRNA_3658 0.59 +0.8
282,766 - 12026 mRNA_3658 0.60 +0.5
282,770 + 12026 mRNA_3658 0.60 +1.4
282,806 + 12026 mRNA_3658 0.64 +0.2
282,812 + 12026 mRNA_3658 0.65 +2.7
282,873 - 12026 mRNA_3658 0.72 -2.1
282,900 + 12026 mRNA_3658 0.75 +0.4
282,928 - 12026 mRNA_3658 0.78 +1.5
282,930 + 12026 mRNA_3658 0.78 -0.0
283,073 - +2.1
283,075 + +0.5
283,163 - +0.2
283,199 - -0.0
283,237 - +1.0
283,239 - -1.9
283,790 + 12027 mRNA_3659 0.29 -1.9

Or see this region's nucleotide sequence