Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3661

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12028 and 12029 overlap by 8 nucleotides12029 and 12030 are separated by 123 nucleotides mRNA_3660: 12028 - HMMPfam-ATPase family associated with various cellular activities (AAA)-PF00004,SUPERFAMILY--SSF52540, at 285,259 to 286,189 12028 mRNA_3661: 12029 - Hypothetical Protein, at 286,182 to 286,643 12029 mRNA_3662: 12030 - KOG2768 Translation initiation factor 2, beta subunit (eIF-2beta), at 286,767 to 288,003 12030

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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285,222 - +0.3
285,346 - +1.3
285,366 + 12028 mRNA_3660 0.11 +0.4
285,525 + 12028 mRNA_3660 0.29 -1.3
285,534 + 12028 mRNA_3660 0.30 +0.1
285,805 + 12028 mRNA_3660 0.59 -1.3
286,475 - 12029 mRNA_3661 0.63 -0.3
286,530 + 12029 mRNA_3661 0.75 -0.8
286,532 - 12029 mRNA_3661 0.76 -0.1
286,536 + 12029 mRNA_3661 0.77 +2.1
286,541 + 12029 mRNA_3661 0.78 -0.5
286,545 - 12029 mRNA_3661 0.79 +0.0
286,560 + 12029 mRNA_3661 0.82 +0.9
286,591 - 12029 mRNA_3661 0.89 -0.2
286,706 - -1.2
286,720 + +0.6
286,721 - -0.1
286,767 + -0.1
286,858 + -0.0
286,879 - -1.5
286,890 - +0.4
286,891 + 12030 mRNA_3662 0.10 +0.7
286,922 - 12030 mRNA_3662 0.13 -0.4
286,972 - 12030 mRNA_3662 0.17 +1.8
286,982 + 12030 mRNA_3662 0.17 -0.4
287,010 + 12030 mRNA_3662 0.20 -0.2
287,063 - 12030 mRNA_3662 0.24 +0.0
287,063 + 12030 mRNA_3662 0.24 -1.1
287,070 + 12030 mRNA_3662 0.24 -0.9
287,079 - 12030 mRNA_3662 0.25 -0.1
287,085 - 12030 mRNA_3662 0.26 +0.4
287,092 + 12030 mRNA_3662 0.26 +1.6
287,100 + 12030 mRNA_3662 0.27 +0.1
287,107 - 12030 mRNA_3662 0.27 -0.3
287,108 + 12030 mRNA_3662 0.28 +2.8
287,211 + 12030 mRNA_3662 0.36 +0.9
287,221 - 12030 mRNA_3662 0.37 +0.1
287,222 + 12030 mRNA_3662 0.37 -0.0
287,231 - 12030 mRNA_3662 0.38 +0.5
287,237 - 12030 mRNA_3662 0.38 +0.5
287,239 + 12030 mRNA_3662 0.38 +1.0
287,246 + 12030 mRNA_3662 0.39 +1.6
287,247 - 12030 mRNA_3662 0.39 +1.4
287,248 + 12030 mRNA_3662 0.39 -0.1
287,248 - 12030 mRNA_3662 0.39 +0.2
287,254 + 12030 mRNA_3662 0.39 +1.0
287,272 + 12030 mRNA_3662 0.41 +0.8
287,308 - 12030 mRNA_3662 0.44 +0.6
287,334 + 12030 mRNA_3662 0.46 +1.9
287,346 + 12030 mRNA_3662 0.47 +1.4
287,389 + 12030 mRNA_3662 0.50 -0.5
287,403 - 12030 mRNA_3662 0.51 -0.2
287,408 + 12030 mRNA_3662 0.52 -0.1
287,410 + 12030 mRNA_3662 0.52 +0.2
287,412 - 12030 mRNA_3662 0.52 -2.5
287,419 + 12030 mRNA_3662 0.53 +0.2
287,421 + 12030 mRNA_3662 0.53 +0.7
287,429 - 12030 mRNA_3662 0.54 +1.1
287,431 - 12030 mRNA_3662 0.54 +0.2
287,433 - 12030 mRNA_3662 0.54 +1.4
287,446 - 12030 mRNA_3662 0.55 +0.8
287,478 + 12030 mRNA_3662 0.57 +2.1
287,507 - 12030 mRNA_3662 0.60 +0.5
287,543 - 12030 mRNA_3662 0.63 -0.4
287,546 + 12030 mRNA_3662 0.63 +0.4
287,579 - 12030 mRNA_3662 0.66 -0.6

Or see this region's nucleotide sequence