Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3665

Experiment: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12032 and 12033 are separated by 105 nucleotides mRNA_3664: 12032 - K15111 SLC25A26 solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26, at 290,844 to 292,094 12032 mRNA_3665: 12033 - HMMPfam-CorA-like Mg2+ transporter protein-PF01544,SUPERFAMILY--SSF143865,SUPERFAMILY--SSF144083, at 292,200 to 295,663 12033

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
291,888 - 12032 mRNA_3664 0.83 -0.0
292,165 - -0.4
292,166 + -0.2
292,187 - +0.5
292,192 - -0.5
292,324 + -0.0
292,326 - -1.0
292,451 - +0.9
292,488 + -0.6
292,612 - 12033 mRNA_3665 0.12 +0.7
292,756 + 12033 mRNA_3665 0.16 -0.2
292,888 + 12033 mRNA_3665 0.20 -0.6
292,932 + 12033 mRNA_3665 0.21 +0.0
293,056 - 12033 mRNA_3665 0.25 +0.2
293,470 - 12033 mRNA_3665 0.37 +2.1
293,492 - 12033 mRNA_3665 0.37 +1.2
293,574 - 12033 mRNA_3665 0.40 +0.7
293,642 + 12033 mRNA_3665 0.42 +0.1
293,799 + 12033 mRNA_3665 0.46 +0.1
294,359 + 12033 mRNA_3665 0.62 +1.2
294,646 - 12033 mRNA_3665 0.71 +0.2
294,951 + 12033 mRNA_3665 0.79 -0.6
295,234 - 12033 mRNA_3665 0.88 +1.4
295,271 - 12033 mRNA_3665 0.89 -0.9
295,583 + +0.4
295,671 + -0.1
295,672 - +2.1
295,711 - +3.1
295,715 - +2.3
295,801 + -0.2
295,802 - +1.6
295,803 + -0.6
295,806 - -0.2
295,818 - +0.5
295,823 + +2.7
295,825 - +1.1
295,829 - -0.4
295,830 - +1.4
295,850 + +2.2
295,853 - -1.5
295,861 - +0.2
295,866 + -0.1
295,974 - +0.1
295,977 - +0.6
295,980 - -0.3
295,990 - +0.7
295,997 - +2.0
295,999 - +0.5
296,001 - +0.4
296,004 - +0.8
296,011 + -1.3
296,012 - +0.2
296,025 + +0.6
296,137 - -0.7
296,144 + -1.9
296,148 - +1.4
296,166 - +1.0
296,173 + +0.3
296,297 - -0.9
296,316 + -0.0
296,319 + +0.0
296,431 - +0.2
296,610 - +0.7
296,612 - +2.2
296,626 + +2.0

Or see this region's nucleotide sequence