Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3675

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12042 and 12043 are separated by 477 nucleotides mRNA_3674: 12042 - K00128 ALDH aldehyde dehydrogenase (NAD+), at 314,540 to 316,836 12042 mRNA_3675: 12043 - K11251 H2A histone H2A, at 317,314 to 317,987 12043

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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316,536 + 12042 mRNA_3674 0.87 +0.3
316,969 - +1.1
316,969 - -0.4
317,135 - -2.7
317,153 + +0.2
317,391 - 12043 mRNA_3675 0.11 +2.0
317,592 + 12043 mRNA_3675 0.41 +2.1
317,597 + 12043 mRNA_3675 0.42 -0.5
317,611 + 12043 mRNA_3675 0.44 -1.0
317,911 + 12043 mRNA_3675 0.89 +2.0
318,190 + +0.4
318,345 + +0.7
318,871 + +0.4

Or see this region's nucleotide sequence