Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3692

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12059 and 12060 are separated by 259 nucleotides12060 and 12061 are separated by 443 nucleotides mRNA_3691: 12059 - K11839 USP8, UBP5 ubiquitin carboxyl-terminal hydrolase 8, at 366,206 to 370,520 12059 mRNA_3692: 12060 - K04371 MAPK1_3 mitogen-activated protein kinase 1/3, at 370,780 to 372,675 12060 mRNA_3693: 12061 - K01714 dapA 4-hydroxy-tetrahydrodipicolinate synthase, at 373,119 to 374,635 12061

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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370,577 - +0.2
370,582 + +1.5
370,997 + 12060 mRNA_3692 0.11 +2.0
371,096 - 12060 mRNA_3692 0.17 +1.2
372,187 + 12060 mRNA_3692 0.74 +0.4
372,318 - 12060 mRNA_3692 0.81 -1.6
372,775 + -0.9
373,050 + -0.1
373,239 - -1.2
373,239 + +0.3

Or see this region's nucleotide sequence