Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3739

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12106 and 12107 are separated by 533 nucleotides12107 and 12108 are separated by 313 nucleotides12108 and 12109 overlap by 8 nucleotides mRNA_3738: 12106 - K06689 UBE2D, UBC4, UBC5 ubiquitin-conjugating enzyme E2 D, at 466,684 to 467,899 12106 mRNA_3739: 12107 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,ProSiteProfiles-Expansin, family-45 endoglucanase-like domain profile.-PS50842,SUPERFAMILY--SSF50685, at 468,433 to 469,585 12107 mRNA_3740: 12108 - Hypothetical Protein, at 469,899 to 470,347 12108 mRNA_3741: 12109 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 470,340 to 473,925 12109

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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467,764 - 12106 mRNA_3738 0.89 +2.6
467,987 + -0.0
468,112 - -1.3
468,122 + -1.0
468,255 + -1.0
468,416 - -1.0
468,428 - +2.0
468,507 - +1.2
468,532 + -0.5
468,535 - -1.6
468,539 - +0.5
468,694 + 12107 mRNA_3739 0.23 +1.2
469,126 + 12107 mRNA_3739 0.60 +1.4
469,139 + 12107 mRNA_3739 0.61 -0.1
469,269 - 12107 mRNA_3739 0.73 +0.4
469,290 + 12107 mRNA_3739 0.74 -1.4
469,543 + +0.3
469,589 - -0.3
469,597 + +0.5
469,652 + -0.0
469,722 + -1.4
469,724 - +1.1
469,742 + +0.8
469,742 + -0.1
469,742 + +1.0
469,753 + +1.5
469,823 + +0.2
469,825 + +0.8
469,849 - +0.9
469,877 + -0.6
469,878 + +0.8
469,881 - +0.2
469,881 - -1.5
469,892 + +1.3
469,895 + +0.4
469,897 + -0.3
469,939 + +0.7
469,962 - 12108 mRNA_3740 0.14 -0.3
469,963 - 12108 mRNA_3740 0.14 +0.4
469,963 - 12108 mRNA_3740 0.14 +1.7
469,965 + 12108 mRNA_3740 0.15 +0.2
469,965 - 12108 mRNA_3740 0.15 +0.3
469,967 - 12108 mRNA_3740 0.15 +1.1
469,968 + 12108 mRNA_3740 0.15 +0.0
469,968 - 12108 mRNA_3740 0.15 +0.8
469,970 + 12108 mRNA_3740 0.16 +2.4
469,984 - 12108 mRNA_3740 0.19 -0.4
469,998 + 12108 mRNA_3740 0.22 +0.7
470,000 + 12108 mRNA_3740 0.22 +1.3
470,002 - 12108 mRNA_3740 0.23 +0.2
470,002 - 12108 mRNA_3740 0.23 +1.4
470,018 - 12108 mRNA_3740 0.27 -0.4
470,041 + 12108 mRNA_3740 0.32 +1.0
470,052 - 12108 mRNA_3740 0.34 +0.2
470,064 - 12108 mRNA_3740 0.37 -0.3
470,121 + 12108 mRNA_3740 0.49 -0.1
470,192 + 12108 mRNA_3740 0.65 -0.2
470,250 + 12108 mRNA_3740 0.78 -0.6
470,259 + 12108 mRNA_3740 0.80 +1.3
470,291 + 12108 mRNA_3740 0.87 +0.2
470,325 + +0.0
470,430 - -0.5
470,478 - +0.1

Or see this region's nucleotide sequence