Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3754

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12121 and 12122 are separated by 319 nucleotides12122 and 12123 are separated by 334 nucleotides mRNA_3753: 12121 - K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase, at 505,655 to 508,720 12121 mRNA_3754: 12122 - K01641 E2.3.3.10 hydroxymethylglutaryl-CoA synthase, at 509,040 to 510,998 12122 mRNA_3755: 12123 - K01893 NARS, asnS asparaginyl-tRNA synthetase, at 511,333 to 513,065 12123

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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508,187 - 12121 mRNA_3753 0.83 +0.7
508,197 + 12121 mRNA_3753 0.83 +2.3
508,205 + 12121 mRNA_3753 0.83 -2.0
508,209 + 12121 mRNA_3753 0.83 -2.4
508,217 + 12121 mRNA_3753 0.84 -0.2
508,334 + 12121 mRNA_3753 0.87 +1.0
508,337 - 12121 mRNA_3753 0.87 +2.2
508,339 - 12121 mRNA_3753 0.88 -0.2
508,352 + 12121 mRNA_3753 0.88 -0.1
508,451 + -0.7
508,475 - +2.7
508,488 - +1.1
508,522 + -1.0
508,624 + +0.5
508,639 - +0.5
508,642 - +0.8
508,648 - +0.8
508,739 + +0.5
508,776 - +0.3
508,778 - +0.2
508,785 - +1.1
508,934 + -0.8
508,948 + +0.3
509,099 + +1.0
511,008 + -1.1
511,014 - +0.2
511,018 + +4.1
511,019 + +1.6
511,024 + +3.2
511,150 + +1.1
511,160 - -0.6
511,163 - +0.4
511,165 - -0.2
511,171 - +1.7
511,174 - -0.0
511,177 - -0.5
511,178 - +0.9
511,180 + +0.8
511,180 + -2.0
511,181 - -1.0
511,184 + -0.1
511,184 + +0.8
511,186 + +0.1
511,212 - -0.2

Or see this region's nucleotide sequence